New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2552502	185 (0.910)	11 (0.060)	8/140	NT	6.0%	coding (740/1734 nt)	USA300HOU_RS13150	putative ABC transporter ATP‑binding protein
	?	USA300TCH1516_ALE	= 2552516	183 (1.030)					coding (726/1734 nt)	USA300HOU_RS13150	putative ABC transporter ATP‑binding protein

ATAATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2552403‑2552502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgcaataTATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATCATAG  <  USA300TCH1516_ALE/2552516‑2552427                                                                                                                                                                                                ATAATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTA                                                                                                     >  2:1206875/1‑91 ATAATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTA                                                                                                     <  2:2951416/91‑1   AATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAA                                                                                                   >  2:2956181/1‑91   AATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAA                                                                                                   >  2:2492201/1‑91    ATAAGGGTAGGTAAATCAATACTCTGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAAT                                                                                                  >  2:1324152/1‑91    ATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAAT                                                                                                  <  1:272592/91‑1    ATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAAT                                                                                                  >  2:1324141/1‑91     TAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATG                                                                                                 <  1:638487/91‑1     TAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATG                                                                                                 <  1:975622/91‑1     TAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAAGCATTATTGAAACAACTTTTAAACTAAGTAAATG                                                                                                 <  2:246989/91‑1      AAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGC                                                                                                <  2:662946/91‑1       AGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCA                                                                                               >  1:1009834/1‑91       AGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCA                                                                                               >  1:2659338/1‑91        GGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAA                                                                                              <  1:3237722/91‑1        GGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAA                                                                                              >  1:3544522/1‑91         GGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAAT                                                                                             <  2:2522462/91‑1         GGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAAT                                                                                             >  1:587812/1‑91         GGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAAT                                                                                             >  1:587852/1‑91          gcAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATA                                                                                            >  2:2167142/3‑91          GTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATA                                                                                            >  2:39908/1‑91          GTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATA                                                                                            >  1:816561/1‑91          GTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATA                                                                                            >  1:816442/1‑91                      ATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAA                                                                                <  2:1486532/91‑1                           ATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTAT                                                                           <  2:1373070/91‑1                            TGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATT                                                                          <  2:187930/91‑1                            TGATTCATACATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATT                                                                          <  2:401860/91‑1                             GATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATTG                                                                         <  1:3853533/91‑1                              ATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATTGC                                                                        <  1:688618/91‑1                               TTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATTGCA                                                                       <  1:2552573/91‑1                                TCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATTGCAT                                                                      <  2:2410229/91‑1                                       TAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATTGCATTTACTTA                                                               <  2:1038752/91‑1                                       TAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATTGCATTTACTTA                                                               <  1:2262489/91‑1                                       TAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATATATCCCATTCAATTTATTGCATTTACTTA                                                               <  1:2262474/91‑1                                                                                           AAATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATAT           >  2:1290129/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          >  2:1796825/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          <  1:1256302/91‑1                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          >  2:1349146/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          >  2:1349132/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          <  2:499422/91‑1                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          >  1:1751360/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          >  1:921173/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          >  1:217385/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          <  1:2360877/91‑1                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          >  1:2532997/1‑91                                                                                            AATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATG          <  1:336663/91‑1                                                                                             ATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGA         >  2:798587/1‑91                                                                                             ATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGA         >  1:1393036/1‑91                                                                                             ATGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGA         >  1:457412/1‑91                                                                                              TGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAA        >  1:81474/1‑91                                                                                              TGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAA        <  2:2742089/91‑1                                                                                              TGCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAA        <  1:963934/91‑1                                                                                              TGCAATATATCCCATTAAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAA        <  1:750567/91‑1                                                                                               GCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAAT       >  2:3638931/1‑91                                                                                               GCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAAT       >  2:56533/1‑91                                                                                               GCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAAT       >  2:1052638/1‑91                                                                                               GCAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAAT       >  2:1052662/1‑91                                                                                                CAATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATC      <  1:920986/91‑1                                                                                                 AATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATCA     <  1:3135359/91‑1                                                                                                 AATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATCA     >  1:2208636/1‑91                                                                                                  ATATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATCAT    <  1:2099479/91‑1                                                                                                   TATATCCCAATCAATTTATTGCATTTACTTAGTTTAAATGATGTTTCAATAATGATTTTATTAGTTGCAGGCTTATTATATATGAATCATA   <  1:1692081/91‑1                                                                                                    ATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATCATAG  >  1:442392/1‑91                                                                                                    ATATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATCATAG  <  2:661665/91‑1                                                                                                                                                                                                ATAATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2552403‑2552502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgcaataTATCCCATTCAATTTATTGCATTTACTTAGTTTAAAAGTTGTTTCAATAATGATTGTATTAGTTGCATGCTTATTATATATGAATCATAG  <  USA300TCH1516_ALE/2552516‑2552427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.