BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2552502	185 (0.910)	11 (0.060)	8/140	NT	6.0%	coding (740/1734 nt)	USA300HOU_RS13150	putative ABC transporter ATP‑binding protein
*	?	USA300TCH1516_ALE	= 2552516	183 (1.030)	11 (0.060)	8/140	NT	6.0%	coding (726/1734 nt)	USA300HOU_RS13150	putative ABC transporter ATP‑binding protein

Only 100 of 255 total aligned reads displayed.

ACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGAT  >  USA300TCH1516_ALE/2552426‑2552606

  tATGATTCATATATAATAAGCCTGCAACTAATAAAATCATTATTGAAACATCATTTAAACTAAGTAAATGCAATAAATTGATTGGGATAta                                                                                          <  1:1692081‑M2/91‑3 (MQ=255)

    tGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtatt                                                                                        >  1:2208636‑M2/1‑87 (MQ=255)

      aTTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgc                                                                                      >  2:1052638‑M2/1‑85 (MQ=255)

       ttCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTTAATGGGATAtattgca                                                                                     <  1:750567‑M2/91‑8 (MQ=255)

       ttCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgca                                                                                     <  2:2742089‑M2/91‑8 (MQ=255)

       ttCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgca                                                                                     <  1:963934‑M2/91‑8 (MQ=255)

        tCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgcat                                                                                    >  2:798587‑M2/1‑83 (MQ=255)

        tCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgcat                                                                                    >  1:457412‑M2/1‑83 (MQ=255)

        tCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgcat                                                                                    >  1:1393036‑M2/1‑83 (MQ=255)

         cATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgcatt                                                                                   >  2:1349132‑M2/1‑82 (MQ=255)

         cATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgcatt                                                                                   >  1:1751360‑M2/1‑82 (MQ=255)

         cATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgcatt                                                                                   <  1:336663‑M2/91‑10 (MQ=255)

         cATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATAtattgcatt                                                                                   >  1:2532997‑M2/1‑82 (MQ=255)

           tatataATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTc                                                                                 <  1:1627942/91‑1 (MQ=255)

           tatataATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTc                                                                                 <  2:3098457/91‑1 (MQ=255)

           tatataATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTc                                                                                 <  1:2758178/91‑1 (MQ=255)

              ataataAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTAt                                                                              <  2:413824/91‑1 (MQ=255)

                   aaGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTg                                                                         >  1:912834/1‑91 (MQ=255)

                   aaGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTg                                                                         >  2:1714830/1‑91 (MQ=255)

                    aGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGt                                                                        >  2:869608/1‑91 (MQ=255)

                     gCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTa                                                                       >  2:1514847/1‑91 (MQ=255)

                     gCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTa                                                                       >  2:2128204/1‑91 (MQ=255)

                      cATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAt                                                                      <  1:1799116/91‑1 (MQ=255)

                       aTGCAACTAATACAAGCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAtt                                                                     <  2:2022714/91‑1 (MQ=255)

                        tGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAttt                                                                    <  2:1185856/91‑1 (MQ=255)

                         gCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTta                                                                   >  2:1741494/1‑91 (MQ=255)

                         gCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTta                                                                   >  2:3207075/1‑91 (MQ=255)

                           aaCTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTtata                                                                 <  1:3284416/91‑1 (MQ=255)

                           aaCTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTtata                                                                 <  1:2954576/91‑1 (MQ=255)

                            aCTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATAc                                                                <  2:2145220/91‑1 (MQ=255)

                            aCTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATAc                                                                >  1:3893692/1‑91 (MQ=255)

                              tAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGt                                                              <  2:2487869/91‑1 (MQ=255)

                              tAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGt                                                              >  1:2970172/1‑91 (MQ=255)

                                aTACAATCATTATTGAAACAACTTTTAAACTATGTAAATGCAATAAATTGAATGGGTTATATTGCATTTCTATTTTTGTATTTATACGttt                                                            <  1:2874614/91‑1 (MQ=255)

                                aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATGAATTGAATAGGATATATTGCATTTCTATTTTTGTATTTATACGttt                                                            <  1:3151429/91‑1 (MQ=255)

                                aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGttt                                                            <  2:34954/91‑1 (MQ=255)

                                aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGttt                                                            <  2:2208845/91‑1 (MQ=255)

                                  aCAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTAc                                                          <  1:1548795/91‑1 (MQ=255)

                                    aaTCATTATTGAAACAACTTTTAAACTAAGTAACTGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTCTACGTTTACtt                                                        >  2:237244/1‑91 (MQ=255)

                                    aaTCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAATTTGAATGGGATATATTGCCTTTCTATTTTTGTATTTATACGTTTACtt                                                        >  2:105657/1‑91 (MQ=255)

                                      tCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTc                                                      >  1:1084476/1‑91 (MQ=255)

                                       cATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCa                                                     >  1:3485244/1‑91 (MQ=255)

                                        attattGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCAt                                                    <  2:14699/91‑1 (MQ=255)

                                          tattGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTTATTg                                                  <  1:3125878/91‑1 (MQ=255)

                                           attGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGa                                                 >  1:3826440/1‑91 (MQ=255)

                                            ttGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTTTTTTTTTTTGTTTACTTTCATTGAc                                                >  2:3593047/1‑91 (MQ=255)

                                            ttGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGAc                                                <  1:2095031/91‑1 (MQ=255)

                                             tGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACt                                               >  1:1455535/1‑91 (MQ=255)

                                              gAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTg                                              <  1:92746/91‑1 (MQ=255)

                                              gAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTg                                              >  1:2350152/1‑91 (MQ=255)

                                              aaaaCAACTTTTAAACTAAGTAAATTCAATAAATTAAATCTGATATATTTCATTTCTATTTTTTTATTTATACGTTTACTTTCATTAACTg                                              <  2:367160/90‑1 (MQ=255)

                                               aaaCAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGc                                             >  1:1450913/1‑91 (MQ=255)

                                               aaaCAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACATTTACTTTCATTGACTGc                                             <  2:3229117/91‑1 (MQ=255)

                                                aacaacTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCt                                            <  2:2832493/91‑1 (MQ=255)

                                                   aacTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTgg                                         <  1:1724078/91‑1 (MQ=255)

                                                   aacTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTgg                                         <  2:1095427/91‑1 (MQ=255)

                                                    ccTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTGTCCTTGACTGCTTCGt                                        <  2:498318/90‑1 (MQ=255)

                                                    acTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGt                                        >  2:1975468/1‑91 (MQ=255)

                                                    acTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGt                                        >  1:2164014/1‑91 (MQ=255)

                                                    acTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGt                                        <  1:3599037/91‑1 (MQ=255)

                                                     cTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGtt                                       >  2:2942060/1‑91 (MQ=255)

                                                      ttttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTa                                      <  2:2928077/91‑1 (MQ=255)

                                                       tttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaa                                     >  2:816660/1‑91 (MQ=255)

                                                        ttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaaa                                    >  1:1927758/1‑91 (MQ=255)

                                                        ttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaaa                                    >  1:1249329/1‑91 (MQ=255)

                                                          aaaCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAAc                                  >  2:3683495/1‑91 (MQ=255)

                                                            aCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACtt                                <  2:3344903/91‑1 (MQ=255)

                                                            aCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACtt                                <  2:1633965/91‑1 (MQ=255)

                                                             cTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACttt                               <  2:756077/91‑1 (MQ=255)

                                                             cTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACttt                               <  2:756328/91‑1 (MQ=255)

                                                             cTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACttt                               >  1:1034589/1‑91 (MQ=255)

                                                              tAAGTAAATGCAATAAATTGAATGGGATAtattgcatttacttagtttaaaagttgtttcaataatgattgtattagttgcatgcttatta                              <  1:2262474‑M2/91‑63 (MQ=255)

                                                              tAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACtttt                              <  1:1916566/91‑1 (MQ=255)

                                                                aGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTaa                            >  1:2582515/1‑91 (MQ=255)

                                                                 gTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAg                           <  1:1298415/91‑1 (MQ=255)

                                                                 gTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAg                           >  1:129064/1‑91 (MQ=255)

                                                                    aaTGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACt                        >  1:1370101/1‑91 (MQ=255)

                                                                    aaTGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACt                        >  1:2832264/1‑91 (MQ=255)

                                                                    aaTGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACt                        >  1:586315/1‑91 (MQ=255)

                                                                      tGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGATTGGTTAAAACTTTTAAGACTCg                      <  1:3789828/91‑1 (MQ=255)

                                                                        cAATAAATTGAATGGGATAtattgcatttacttagtttaaaagttgtttcaataatgattgtattagttgcatgcttattatatatgaatc                    <  1:3853533‑M2/91‑73 (MQ=255)

                                                                        cAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTa                    <  2:3840506/91‑1 (MQ=255)

                                                                         aaTAAATTGAATGGGATAtattgcatttacttagtttaaaagttgtttcaataatgattgtattagttgcatgcttattatatatgaatca                   <  2:187930‑M2/91‑74 (MQ=255)

                                                                          aTAAATTGAATGGGATAtattgcatttacttagtttaaaagttgtttcaataatgattgtattagttgcatgcttattatatatgaatcat                  <  2:1373070‑M2/91‑75 (MQ=255)

                                                                          aTAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTAtt                  <  1:1272939/91‑1 (MQ=255)

                                                                            aaaTTGAATGGGATATATTGCATTTCTATTTTTGTATTTATATGTTTACTTTCATTGACTGCTTTGTTAAAACTTTTAAGACTCGTAtttt                >  2:2576440/1‑91 (MQ=255)

                                                                            aaaTTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTAtttt                <  1:2666455/91‑1 (MQ=255)

                                                                             aaTTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATtttc               <  1:2137720/91‑1 (MQ=255)

                                                                              aTTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTCACTGCTTGGTTAAAACTTTTAAGACTCGTATtttct              >  2:3120053/1‑91 (MQ=255)

                                                                                 gAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATtttctttc           >  2:3889527/1‑91 (MQ=255)

                                                                                 gAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATtttctttc           >  1:3374769/1‑91 (MQ=255)

                                                                                  aaTGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTcg          <  1:2365007/91‑1 (MQ=255)

                                                                                   aTGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTcgc         <  2:608250/91‑1 (MQ=255)

                                                                                    tGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTcgcg        <  2:589775/91‑1 (MQ=255)

                                                                                    tGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTcgcg        >  1:187334/1‑91 (MQ=255)

                                                                                     gggATATATTGCTGTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAGCTTTTAAGTCTCGTATTTTGTTTCGCGa       <  2:455856/91‑1 (MQ=255)

                                                                                      ggATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGaa      <  2:2877988/91‑1 (MQ=255)

                                                                                      ggATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGaa      >  2:2675815/1‑91 (MQ=255)

                                                                                        atatacTGCATTTCTATTTTTGTATGTATACGTTTACTTCCATTGACTGCTTGCTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATg    <  1:3671814/91‑1 (MQ=255)

                                                                                          atatTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGAt  >  1:377644/1‑91 (MQ=255)

ACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGAT  >  USA300TCH1516_ALE/2552426‑2552606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.