| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2573677 = | 229 (1.120) | 15 (0.090) | 9/138 | NT | 8.0% | intergenic (‑203/+91) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD |
| ? | USA300TCH1516_ALE | 2573715 = | 146 (0.830) | intergenic (‑241/+53) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD | |||||
TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > USA300TCH1516_ALE/2573715‑2573802 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT > 2:3323936/1‑91 AATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGTTCGTTAAGGTGCTCAAATAATCTTT > 2:296803/1‑91 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG > 2:731804/1‑91 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG > 2:3015848/1‑91 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG > 2:3015849/1‑91 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGA > 1:2837721/1‑91 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATATTTGA > 2:3949842/1‑91 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG > 2:96845/1‑91 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 2:1084388/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG > 2:1600514/1‑91 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:2452755/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:1908629/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 2:619641/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 2:619670/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 1:3419089/91‑1 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA > 1:2667461/1‑91 TAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTCT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 1:2561206/91‑1 TAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATGTAT‑AAAAACTGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 1:3153180/91‑1 TAATAGTAGAAGATGTTTATAATTTAGCGATGTCGTTTCATGATGTAT‑AAAAAGTGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 1:3153192/91‑1 TAATAGTAGAAGATGTTTATAATTGAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 2:2188459/91‑1 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAG < 2:2188489/91‑1 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC < 1:919407/91‑1 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC < 1:919523/91‑1 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC < 1:3025512/91‑1 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC < 1:1934016/91‑1 ATATTAGAAGATGTTTATAGTTTAGCGATTTCGTTTCAGGGTTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCGAAGAATCTTTGAGTAGCC < 2:1170295/91‑1 ATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC > 1:3519037/1‑91 ATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC > 1:3519410/1‑91 ATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC > 2:374230/1‑91 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT > 2:2899596/1‑91 AATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCT > 2:812010/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:1275679/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:3834610/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:3834726/1‑91 TACTCAAGGAGCTCAAATACTCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAACCGCTAAATTATAAACATCTTCTACTATTAC > 2:3450493/1‑91 ACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACA > 1:3412407/1‑91 CTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACAT > 1:778685/1‑91 CTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACAT > 1:3016544/1‑91 CTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACAT > 1:559637/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 2:1145340/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 1:966494/1‑91 AGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGACACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTA > 1:3948404/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 2:914589/1‑91 GAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAAT > 1:138280/1‑91 GAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAAT > 1:1962113/1‑91 TTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATG > 1:1998549/1‑91 TGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGA < 1:3930939/91‑1 TGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGA < 1:2719004/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 1:1689787/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:2452755/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGACCGATGAT > 2:3461995/1‑91 AGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATT < 1:3251138/91‑1 AGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATT > 2:2340047/1‑91 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA < 1:576094/91‑1 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA < 1:1043644/91‑1 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG > 1:1698050/1‑91 AGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGA < 1:3531542/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT > 2:2485426/1‑91 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 2:739215/91‑1 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 1:2908937/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 1:3015889/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 1:3015917/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 2:1985969/1‑91 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTAT‑AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > USA300TCH1516_ALE/2573715‑2573802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |