BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2573677 =	229 (1.120)	15 (0.090)	9/138	NT	8.0%	intergenic (‑203/+91)	norB_5/opuCD	Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD
*	?	USA300TCH1516_ALE	2573715 =	146 (0.830)	15 (0.090)	9/138	NT	8.0%	intergenic (‑241/+53)	norB_5/opuCD	Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD

Only 100 of 232 total aligned reads displayed.

ATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGAT  >  USA300TCH1516_ALE/2573625‑2573805

  gATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAt                                                                                          <  2:69709/91‑1 (MQ=255)

  gATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAt                                                                                          <  1:1648885/91‑1 (MQ=255)

  gATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAt                                                                                          >  1:1970348/1‑91 (MQ=255)

   agaagatgtttataatttagcgatttcgtttcatgatttataaaaaatgAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtt                                                                                         >  2:812010‑M1/50‑91 (MQ=255)

    taataaTTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttt                                                                                        >  1:3481323/1‑91 (MQ=255)

    taataaTTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttt                                                                                        <  1:2055223/91‑1 (MQ=255)

     aataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAACAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttt                                                                                       >  2:389013/1‑91 (MQ=255)

     aataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttt                                                                                       <  2:3310477/91‑1 (MQ=255)

      ataatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAttttt                                                                                      <  2:1343648/91‑1 (MQ=255)

       taatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttttt                                                                                     <  1:3825164/91‑1 (MQ=255)

       taatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttttt                                                                                     >  1:3923345/1‑91 (MQ=255)

       taatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAtttttt                                                                                     <  2:3263760/91‑1 (MQ=255)

        aatTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTta                                                                                    <  2:381969/91‑1 (MQ=255)

         atTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTtat                                                                                   <  1:501367/91‑1 (MQ=255)

          ttGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTtata                                                                                  <  1:3310561/91‑1 (MQ=255)

           tGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaa                                                                                 >  1:3199979/1‑91 (MQ=255)

           tGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaa                                                                                 <  2:2442424/91‑1 (MQ=255)

            gCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaaa                                                                                <  2:2117346/91‑1 (MQ=255)

            gCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATaaa                                                                                <  1:866898/91‑1 (MQ=255)

              tATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATc                                                                              <  2:18948/91‑1 (MQ=255)

                 tggaGTGCAAACGCAAACAAACACAGCCTATAAAAGGGCTACTCAAAGATTATGTGAGCGCCTTGAGTAGCCTCATTTTTTATAAATCATg                                                                           <  2:2546163/88‑1 (MQ=255)

                  ttAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATgt                                                                          >  2:2751931/1‑90 (MQ=255)

                  ttAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGa                                                                          >  1:2182825/1‑91 (MQ=255)

                     gtgtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAAc                                                                       >  1:744306/1‑91 (MQ=255)

                       gtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGa                                                                     >  2:171379/1‑91 (MQ=255)

                       gtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGa                                                                     >  2:294369/1‑91 (MQ=255)

                       gtAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGa                                                                     >  1:241166/1‑91 (MQ=255)

                          aaCGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAAt                                                                  >  2:2228578/1‑91 (MQ=255)

                            cGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCg                                                                >  1:2210686/1‑91 (MQ=255)

                               aTACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTa                                                             >  2:3732310/1‑91 (MQ=255)

                                  cAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAAt                                                          >  1:24693/1‑91 (MQ=255)

                                   aaaCACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAAtt                                                         >  2:826681/1‑91 (MQ=255)

                                    aaCACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATta                                                        >  1:1727451/1‑91 (MQ=255)

                                    aaCACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATta                                                        >  2:2736346/1‑91 (MQ=255)

                                      cacaACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATtata                                                      >  1:3259350/1‑91 (MQ=255)

                                        caACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATaaa                                                    <  2:1784964/91‑1 (MQ=255)

                                          aCCTATAAAAAGGCTACTCAAAGATTATTTGAGTTCCATGAGTAGCCTCATTTTTTATACATCATGAAACGAAATCGCTAAATTATAAACa                                                  >  1:3155060/1‑91 (MQ=255)

                                          aCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACa                                                  <  1:3223713/91‑1 (MQ=255)

                                          aCCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACa                                                  <  1:2995739/91‑1 (MQ=255)

                                           ccTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAt                                                 >  1:3880208/1‑91 (MQ=255)

                                            cTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtc                                                >  1:3600509/1‑91 (MQ=255)

                                            cTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtc                                                >  2:2838674/1‑91 (MQ=255)

                                            cTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtc                                                >  2:2288848/1‑91 (MQ=255)

                                             tataAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtct                                               <  2:2666147/91‑1 (MQ=255)

                                             tataAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtct                                               >  2:1509063/1‑91 (MQ=255)

                                              ataAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtctt                                              <  1:292879/91‑1 (MQ=255)

                                              ataAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtctt                                              <  1:1395562/91‑1 (MQ=255)

                                               taAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAtcttc                                             <  2:338052/91‑1 (MQ=255)

                                                  aaaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctac                                          >  2:3253238/1‑91 (MQ=255)

                                                  aaaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctac                                          >  1:1221532/1‑91 (MQ=255)

                                                   aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact                                         <  2:2074062/91‑1 (MQ=255)

                                                   aaGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctact                                         <  1:174315/91‑1 (MQ=255)

                                                    aggctactcaaggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTctacta                                        >  1:3834726‑M2/39‑91 (MQ=255)

                                                     GGCTACTCAAAGATTCTTCGAGCTCCTTGAGTAGCCTCATTTTTTATAAACCCTGAAACGAAATCGCTAAACTATAAACATCTTCTAatat                                       <  2:1170295‑M1/91‑1 (MQ=255)

                                                     GGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTAt                                       >  1:3519410‑M1/1‑91 (MQ=255)

                                                      GCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTAtt                                      <  1:919407‑M1/91‑1 (MQ=255)

                                                       CTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTCAATTATAAACATCTTCTACTATTa                                     <  2:2188459‑M1/91‑1 (MQ=255)

                                                       CTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCAGTTTTTATACATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTa                                     <  1:3153180‑M1/91‑1 (MQ=255)

                                                        tactcaaggagctcaaatactctttgagtagcctCATTTTTTATAAATCATGAAACGAAACCGCTAAATTATAAACATCTTCTACTATTAc                                    >  2:3450493‑M2/35‑91 (MQ=255)

                                                        TACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTAc                                    >  1:2667461‑M1/1‑91 (MQ=255)

                                                         actcaaggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACa                                   >  1:3412407‑M2/34‑91 (MQ=255)

                                                         ACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACa                                   <  2:619641‑M1/91‑1 (MQ=255)

                                                          CTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACat                                  >  2:1600514‑M1/1‑91 (MQ=255)

                                                          CTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACat                                  <  2:1084388‑M1/91‑1 (MQ=255)

                                                          CTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACat                                  <  1:1908629‑M1/91‑1 (MQ=255)

                                                           TCAAATATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACata                                 >  2:3949842‑M1/1‑91 (MQ=255)

                                                           TCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACata                                 >  1:2837721‑M1/1‑91 (MQ=255)

                                                            CAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACatat                                >  2:3015849‑M1/1‑91 (MQ=255)

                                                            CAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACatat                                >  2:731804‑M1/1‑91 (MQ=255)

                                                             AAAGATTATTTGAGCACCTTAACGAACCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAtt                               >  2:296803‑M1/1‑91 (MQ=255)

                                                               ggagctcaaataatctttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTaa                             >  2:914589‑M2/28‑91 (MQ=255)

                                                               aGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAGATTATAAACATCTTCTACTATTACATATTat                             <  2:1645898/91‑2 (MQ=255)

                                                                gATTACTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATTGCTAAATTATAAACATCTTCTACTATTACATATTAAt                            <  1:3675229/91‑1 (MQ=255)

                                                                 attattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATa                           >  1:980646/1‑91 (MQ=255)

                                                                  ttattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATAc                          <  1:1554069/91‑1 (MQ=255)

                                                                   tattTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACt                         >  2:3638566/1‑91 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        <  1:1583364/91‑1 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        <  2:1463735/91‑1 (MQ=255)

                                                                    attTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACtt                        <  1:2360152/91‑1 (MQ=255)

                                                                     tttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACttt                       <  1:627333/91‑1 (MQ=255)

                                                                      ttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTg                      >  1:2573565/1‑91 (MQ=255)

                                                                      ttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTg                      >  1:797380/1‑91 (MQ=255)

                                                                      ttGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTg                      >  1:3022603/1‑91 (MQ=255)

                                                                         aGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCgg                   >  1:130247/1‑91 (MQ=255)

                                                                         aGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCgg                   <  2:2121239/91‑1 (MQ=255)

                                                                          gCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGc                  <  1:1947658/91‑1 (MQ=255)

                                                                          gCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGc                  >  1:3443893/1‑91 (MQ=255)

                                                                            tCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCg                <  1:3933615/91‑1 (MQ=255)

                                                                             ccTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCga               >  2:481522/1‑91 (MQ=255)

                                                                              cTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgat              <  1:2756525/91‑1 (MQ=255)

                                                                              cTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgat              >  2:3508070/1‑91 (MQ=255)

                                                                                 gagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCgatgat           <  1:1689787‑M2/82‑1 (MQ=255)

                                                                                   gtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTa         <  1:576094‑M2/84‑1 (MQ=255)

                                                                                   gtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTa         <  1:1043644‑M2/84‑1 (MQ=255)

                                                                                     agcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGa       <  1:3531542‑M2/86‑1 (MQ=255)

                                                                                      gcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAt      >  2:2485426‑M2/5‑91 (MQ=255)

                                                                                       cctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAtt     >  2:1985969‑M2/4‑91 (MQ=255)

                                                                                       cctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAtt     >  1:3015917‑M2/4‑91 (MQ=255)

                                                                                       cctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAtt     >  1:2908937‑M2/4‑91 (MQ=255)

                                                                                          cATTTTTTATAAATCATGAAACGAAATCGCTAAATTACAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAgattgat  >  1:3328426/1‑91 (MQ=255)

ATGATAATAATTGCTATTTTAGTGTAAACGCATACAAACACAACCTATAAAAAGGCTACTCAAAGATTATTTGAGCTCCTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGAT  >  USA300TCH1516_ALE/2573625‑2573805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.