| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2577878 | 153 (0.750) | 26 (0.150) | 11/140 | NT | 15.5% | intergenic (‑599/+71) | opuCA/USA300HOU_RS13285 | Carnitine transport ATP‑binding protein OpuCA/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2577890 | 149 (0.840) | intergenic (‑611/+59) | opuCA/USA300HOU_RS13285 | Carnitine transport ATP‑binding protein OpuCA/hypothetical protein | |||||
CACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2577780‑2577878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaaccaaTGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAAA < USA300TCH1516_ALE/2577890‑2577801 CACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACAGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAA < 2:259476/91‑1 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGCATTCCAACGTCAAAGTCTTGCCCATGACAGACACACCTAAAAAAA > 2:694906/1‑91 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAA > 1:3270643/1‑91 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAA > 1:3874769/1‑91 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAA > 2:2422907/1‑91 ACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAA > 1:520014/1‑91 CCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAAC > 2:74297/1‑91 CCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAAAAAAAAAAAAAAAAACA < 2:1516100/91‑1 TTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAACCAAACAAC > 2:3678920/1‑91 TTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAAC > 1:993031/1‑91 TTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAAC > 1:991563/1‑91 TTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAAC < 1:445695/91‑1 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACC < 2:1848827/91‑1 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACC < 2:1849049/91‑1 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACC < 1:3561893/91‑1 TGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCACGACAGACACACCTAAAAAAACAACC > 1:3694718/1‑91 GCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCA > 2:3187006/1‑91 CCTTTTGCTAACATTTTCTACTCCCAAGCGTGTAACGGAATTCCTACGTCAAACTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA < 1:3163802/91‑1 CCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA > 1:1158154/1‑91 CCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA < 1:2692951/91‑1 ACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGC < 1:36618/91‑1 ACATTTTCTACTCCCAAGCCTGTAACGGAATTCAAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGC < 2:1253061/91‑1 ACATTTTCTACTCCCAAGCCTGTAACGGAATTCAAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGC < 2:1096047/91‑1 TTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGT < 2:1844010/91‑1 TTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGGTGTT < 1:3128098/91‑1 TTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTT < 2:20466/91‑1 TTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTT < 2:3845273/91‑1 TTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTT < 1:451614/91‑1 TTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTG < 1:3115688/91‑1 TCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGG < 1:489441/91‑1 CTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCT‑AAAAAACAACCAATGGCTCATGCTGTTGGTT < 2:2392698/91‑1 CTAATCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGT < 1:3557133/91‑1 gagTCCCAAGCCTGGAACGGAAGTCCAGCGTCAAAGTGGTGGCCATGACAGACACGCCTAAAGAAACAACCAATGGCTCATGCTGTTGGTT < 2:1049949/88‑1 TACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTT < 1:857419/91‑1 TACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTT < 2:2833006/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 1:1852940/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 1:844990/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 2:530249/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 2:1925575/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 2:3489526/91‑1 ACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTG < 1:3433416/91‑1 CTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGT < 1:3070824/91‑1 CTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGT < 1:3070952/91‑1 ATTCCAACGTCCAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTC < 1:1738377/91‑1 ATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCTGTTGGTTGTTCTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGA > 2:977541/1‑91 ATGACAGACACACCTAAAAAAACAACCAATGGCTCATGCAGTTGGCTGTTTTTTTAGGTGCGTCTGTCACGGGCAACACTTTGACGTTGGA > 2:977573/1‑91 cgcAACAACCAATGGCTCATGCTGGTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGACTTCCGTTACAGGATTG > 2:861822/4‑91 AACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGA < 1:3887479/91‑1 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGcg > 2:2372670/1‑89 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAG > 2:2371259/1‑91 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAG > 1:3042639/1‑91 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAG > 1:104370/1‑91 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAG > 2:2983705/1‑91 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAG < 1:2564480/91‑1 ACAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAG > 1:3082733/1‑91 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 2:3620469/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 1:3766216/91‑1 CAACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGT < 1:2708402/91‑1 AACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTA > 1:3456442/1‑91 AACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTA < 2:463145/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTATGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 1:3357041/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCGTGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 1:3143137/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 1:1839799/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG > 1:2294074/1‑91 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 2:2485233/91‑1 ACCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAG < 1:2134747/91‑1 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTAGAGGCTTGGGAGTAGA > 2:1561049/1‑91 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA < 1:2352958/91‑1 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA > 2:3124889/1‑91 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA > 2:3116784/1‑91 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA < 1:3251732/91‑1 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA > 1:2158833/1‑91 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA > 1:3932745/1‑91 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA < 2:1955268/91‑1 CCAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA > 2:3125037/1‑91 CCAATGGCTCATGCTGTTGGTTGTTTCTTTAGGTGTGTCTGTCACGGGCAACACTTTCACGTTGGAATTCCGTTACAGGCTTGGGAGTAGA > 2:396661/1‑91 CCAATGGCTCATGCTGTTGGTTGCTTTTTTCGGTGTGTCTGTCATGGGCAACACTTTGACGCTGGAATTCCGTTACAGGCCTGGGAGTAGA > 2:1496271/1‑91 CAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAA < 1:3465061/91‑1 CAATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAA > 2:3605529/1‑91 AATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAA > 2:3929053/1‑91 AATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAA > 2:1051818/1‑91 AATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAA < 2:2036049/91‑1 AATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAA > 1:3373216/1‑91 AATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAA > 1:3209271/1‑91 ATGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAAA > 2:913204/1‑91 CACCCTTGCCTTTTGCTAACATTTTCTACTCCCAAGCCTGTAACGGAATTCCAACGTCAAAGTGTTGCCCATGACAGACACACCTAAAAAAACAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2577780‑2577878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaaccaaTGGCTCATGCTGTTGGTTGTTTTTTTAGGTGTGTCTGTCATGGGCAACACTTTGACGTTGGAATTCCGTTACAGGCTTGGGAGTAGAAAA < USA300TCH1516_ALE/2577890‑2577801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |