| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2591149 = | 197 (0.970) | 15 (0.080) | 13/154 | NT | 7.7% | intergenic (+43/+181) | USA300HOU_RS13345/ttuB | hypothetical protein/Putative tartrate transporter |
| ? | USA300TCH1516_ALE | 2591189 = | 168 (0.860) | intergenic (+83/+141) | USA300HOU_RS13345/ttuB | hypothetical protein/Putative tartrate transporter | |||||
CATGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2591241‑2591149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAATAT > USA300TCH1516_ALE/2591189‑2591278 CATGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTCAAAGTGCGTTTTGATACTGACTTTTAAGTG > 2:1025227/1‑91CATGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTG < 1:1886260/91‑1CATGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTG > 2:2028563/1‑91CATGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTG > 2:1025210/1‑91 ATGAAACATTCTATATGGCTCGTTTCTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGT < 1:3679389/91‑1 TGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG > 2:887311/1‑91 TGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG > 2:2523936/1‑91 TGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG > 2:1281515/1‑91 TGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG < 1:494998/91‑1 TGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG < 1:2714429/91‑1 TGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG > 1:2476922/1‑91 TGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG > 1:2476812/1‑91 ATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTAT < 1:3710215/91‑1 AGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTGCTTTATTTAGATATACTGTCGTTCTAAAAACGAG > 1:1944957/1‑91 AATCACGCTTAAAAGTGAGTTTTGATACTGACCTTTAAGTGTGCTTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTT > 2:1497746/1‑91 CACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCA > 1:177609/1‑91 ACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCAT > 2:2400671/1‑91 ACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCAT > 2:2400699/1‑91 CGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTGATTTATTTAGATATACCGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATG > 2:3902792/1‑91 GCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGT > 1:2053402/1‑91 TAAAAGTGAGTTTTGATACTGACTTTTAAGTGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCT > 1:3663258/1‑91 AAAAGTGAGTTTTGATACTGACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTA > 2:431859/1‑91 AAGTGAGTTTTGATACTGACTTTTAAGTGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGC > 2:680801/1‑91 AAGGGAGTTTTGATACTGACTTTTAAGTGTGCTTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGC > 2:681037/1‑91 TGAGTTTTGATACTGACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATG > 1:3593303/1‑91 GAGTTTTGATACTGACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGA > 1:765232/1‑91 TTTGATACTGACTTTTAAGCGTGATTTATTTAGATATACTGTCGTCCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCA > 2:869388/1‑91 GTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATCTAGAATGTTTCATGTCCTAGCATGAATCACATGAATCGCCATGCTCAAT > 2:3003449/1‑91 TGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAATt > 2:1726052/1‑90 TGATATATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTCCATGTCCTACCATGAAGCACATGAATCGCCATGCTCAATA > 2:1726126/1‑91 GATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAATAT > 2:1552980/1‑91 GATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAATAT > 2:1553805/1‑91 CATGAAACATTCTATATGGCTCGTTTTTAGAACGACAGTATATCTAAATAAATCACGCTTAAAAGTGAGTTTTGATACTGACTTTTAAGTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2591241‑2591149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAATAT > USA300TCH1516_ALE/2591189‑2591278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |