BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2591149 =	197 (0.970)	15 (0.080)	13/154	NT	7.7%	intergenic (+43/+181)	USA300HOU_RS13345/ttuB	hypothetical protein/Putative tartrate transporter
*	?	USA300TCH1516_ALE	2591189 =	168 (0.860)	15 (0.080)	13/154	NT	7.7%	intergenic (+83/+141)	USA300HOU_RS13345/ttuB	hypothetical protein/Putative tartrate transporter

Only 100 of 223 total aligned reads displayed.

TCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAATAT  >  USA300TCH1516_ALE/2591099‑2591278

 cATGTAAAATTTTTCAGGGTATTATCCATTATCCATACACATCAAAGAGCACACTTAAAAGTCAGTATCAAAGCTCACTTTTAAGCGTGat                                                                                          <  2:74536/91‑1 (MQ=255)

 cATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGat                                                                                          >  1:876699/1‑91 (MQ=255)

  aTGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatt                                                                                         <  1:2093231/91‑1 (MQ=255)

   tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCACAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt                                                                                        >  1:587707/1‑91 (MQ=255)

   tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt                                                                                        >  2:809743/1‑91 (MQ=255)

   tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt                                                                                        >  2:3076867/1‑91 (MQ=255)

    gTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattta                                                                                       >  2:16484/1‑91 (MQ=255)

     tAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttat                                                                                      <  2:1093831/91‑1 (MQ=255)

     attctatatggctcgtttttagaacgacagtatatctaaataaatcacacttaaaagtcagtatcaaaactcacttttaagcgtgatttat                                                                                      <  1:3710215‑M2/6‑1 (MQ=255)

      aaaaTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttatt                                                                                     >  1:975385/1‑91 (MQ=255)

       aaaTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttattt                                                                                    >  2:3805174/1‑91 (MQ=255)

        aaTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGAtttattta                                                                                   <  1:3822087/91‑1 (MQ=255)

        aaTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGAtttattta                                                                                   >  2:2442146/1‑91 (MQ=255)

         aTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAg                                                                                  <  1:3332499/91‑1 (MQ=255)

          tttttCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGa                                                                                 <  2:1477846/91‑1 (MQ=255)

             ttCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGatat                                                                              >  1:3561511/1‑91 (MQ=255)

             ttCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGatat                                                                              <  2:1500118/91‑1 (MQ=255)

             ttCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGatat                                                                              >  1:3425430/1‑91 (MQ=255)

              tCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGAtata                                                                             >  1:2782163/1‑91 (MQ=255)

              tCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGAtata                                                                             <  1:1582787/91‑1 (MQ=255)

               cAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATAc                                                                            <  2:23970/91‑1 (MQ=255)

               cAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATAc                                                                            <  1:1142031/91‑1 (MQ=255)

               cAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATAc                                                                            >  1:2934748/1‑91 (MQ=255)

                agagTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGAATTATTTAGATATACt                                                                           >  2:2962037/1‑91 (MQ=255)

                 gagTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTg                                                                          <  2:2726782/91‑1 (MQ=255)

                   gTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTc                                                                        >  1:1662612/1‑91 (MQ=255)

                    tattatCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCg                                                                       <  1:680515/91‑1 (MQ=255)

                    tattatCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCg                                                                       <  2:1701866/91‑1 (MQ=255)

                     attatccattatccATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGt                                                                      <  2:1779787/91‑1 (MQ=255)

                      ttatccattatccaTACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGtt                                                                     <  2:210398/91‑1 (MQ=255)

                      ttatccattatccaTACACATCAAAAAGCACACTTAAAAGTCAGGATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGtt                                                                     <  1:3137978/91‑1 (MQ=255)

                       tatccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTc                                                                    <  1:507476/91‑1 (MQ=255)

                         tccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTa                                                                  >  1:370317/1‑91 (MQ=255)

                          ccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTaa                                                                 >  2:2322907/1‑91 (MQ=255)

                          ccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTaa                                                                 >  2:398508/1‑91 (MQ=255)

                            attatccagACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTGTAAGCGTGATTTATTTAGATATACTGTCGTTCTaaaa                                                               <  2:3636487/91‑1 (MQ=255)

                             ttatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTaaaaa                                                              >  2:374916/1‑91 (MQ=255)

                             ttatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTaaaaa                                                              >  1:692457/1‑91 (MQ=255)

                              tatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAAc                                                             <  2:3663241/91‑1 (MQ=255)

                              tatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACGCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAAc                                                             <  2:2697728/91‑1 (MQ=255)

                                    tACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCa                                                       >  1:2128910/1‑91 (MQ=255)

                                     acacATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTACGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCat                                                      >  1:3944175/1‑91 (MQ=255)

                                      cacaTCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCata                                                     >  2:653932/1‑91 (MQ=255)

                                      cacaTCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTATAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCata                                                     >  2:3957359/1‑91 (MQ=255)

                                       acaacaAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCatat                                                    <  2:1052889/91‑1 (MQ=255)

                                       acaTCAAAAAGCACACTTAAAATTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCatat                                                    <  1:299352/91‑1 (MQ=255)

                                       acaTCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCatat                                                    <  1:3516170/91‑1 (MQ=255)

                                        caTCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCAtata                                                   <  1:748380/91‑1 (MQ=255)

                                          tCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGa                                                 >  2:2182968/1‑91 (MQ=255)

                                          tCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGa                                                 >  1:2303130/1‑91 (MQ=255)

                                           cAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGaa                                                >  1:1063093/1‑91 (MQ=255)

                                            aaaaaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAAt                                               >  1:598852/1‑91 (MQ=255)

                                            aaaaaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAAt                                               >  1:2385082/1‑91 (MQ=255)

                                              aaaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGt                                             >  2:2475635/1‑91 (MQ=255)

                                              aaaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGt                                             >  2:3528195/1‑91 (MQ=255)

                                               aaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGtt                                            >  2:2179420/1‑91 (MQ=255)

                                                aGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGttt                                           <  1:2553697/91‑1 (MQ=255)

                                                aGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGttt                                           <  1:2050540/91‑1 (MQ=255)

                                                 gCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTc                                          <  1:3544712/91‑1 (MQ=255)

                                                  cacgcttaaaagtgagttttgatactgacttttaagtgtgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCa                                         >  1:177609‑M2/41‑91 (MQ=255)

                                                  CACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCa                                         >  1:2476812‑M1/1‑91 (MQ=255)

                                                  CACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCa                                         >  2:2523936‑M1/1‑91 (MQ=255)

                                                  CACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCa                                         <  1:2714429‑M1/91‑1 (MQ=255)

                                                   acgcttaaaagtgagttttgatactgacttttaagtgtgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCAt                                        >  2:2400699‑M2/40‑91 (MQ=255)

                                                    CACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATg                                       >  2:1025210‑M1/1‑91 (MQ=255)

                                                     acTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGt                                      >  1:913666/1‑91 (MQ=255)

                                                       ttAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAACCATATAGAATGTTTCATGTcc                                    >  2:3195696/1‑91 (MQ=255)

                                                        taaaagtgagttttgatactgacttttaagtgtgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCt                                   >  1:3663258‑M2/35‑91 (MQ=255)

                                                        tAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATgctag                                   <  1:3878738/91‑5 (MQ=255)

                                                         aaaaGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTa                                  <  1:1008376/91‑1 (MQ=255)

                                                           aagtgagttttgatactgacttttaagtgtgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGc                                >  2:680801‑M2/32‑91 (MQ=255)

                                                           aaGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGc                                >  1:3557763/1‑91 (MQ=255)

                                                              tgagttttgatactgacttttaagcgtgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATg                             >  1:3593303‑M2/29‑91 (MQ=255)

                                                              tCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATg                             >  1:1331171/1‑91 (MQ=255)

                                                                aGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGaa                           >  2:3350830/1‑91 (MQ=255)

                                                                aGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGaa                           >  1:990327/1‑91 (MQ=255)

                                                                 gTATCAAATCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCGTGAAg                          <  1:1224721/91‑1 (MQ=255)

                                                                  tATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGc                         >  1:1032575/1‑91 (MQ=255)

                                                                  tATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGc                         >  2:2082879/1‑91 (MQ=255)

                                                                   aTCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGca                        <  2:2220870/91‑1 (MQ=255)

                                                                   aTCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGca                        >  2:4602/1‑91 (MQ=255)

                                                                    tCAAAACTCACTTTTAAGCTTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGcac                       <  2:48553/91‑1 (MQ=255)

                                                                    tCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGcac                       >  2:1996295/1‑91 (MQ=255)

                                                                     cAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGcacc                      >  1:457837/1‑90 (MQ=255)

                                                                       aaaCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATg                    <  2:3404223/91‑1 (MQ=255)

                                                                       aaaCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATg                    <  1:1448494/91‑1 (MQ=255)

                                                                       aaaCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATg                    <  1:1314911/91‑1 (MQ=255)

                                                                       aaaCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATg                    >  1:1947423/1‑91 (MQ=255)

                                                                        aaCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGa                   <  1:1684431/91‑1 (MQ=255)

                                                                        aaCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGa                   <  2:1205771/91‑1 (MQ=255)

                                                                         aCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGaa                  <  1:3718289/91‑1 (MQ=255)

                                                                          cTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAAt                 <  1:3491503/91‑1 (MQ=255)

                                                                          cTCACTTTTAAGCGTGATATATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAAt                 <  2:279522/91‑1 (MQ=255)

                                                                             aCTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGc              >  1:1872767/1‑91 (MQ=255)

                                                                             aCTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGc              <  2:1312529/91‑1 (MQ=255)

                                                                             aCTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGc              <  1:193648/91‑1 (MQ=255)

                                                                             aCTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGc              >  1:3877456/1‑91 (MQ=255)

                                                                                tttAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCAt           <  1:2733684/91‑1 (MQ=255)

                                                                                        tgATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCaatt   >  2:1726052‑M2/3‑90 (MQ=255)

                                                                                         gATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAatat  >  2:1553805‑M2/2‑91 (MQ=255)

TCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCATGTCCTAGCATGAAGCACATGAATCGCCATGCTCAATAT  >  USA300TCH1516_ALE/2591099‑2591278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.