| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2591149 = | 197 (0.970) | 15 (0.080) | 13/154 | NT | 7.7% | intergenic (+43/+181) | USA300HOU_RS13345/ttuB | hypothetical protein/Putative tartrate transporter |
| ? | USA300TCH1516_ALE | 2591189 = | 168 (0.860) | intergenic (+83/+141) | USA300HOU_RS13345/ttuB | hypothetical protein/Putative tartrate transporter | |||||
Only 100 of 247 total aligned reads displayed.
TATTTCTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCA > USA300TCH1516_ALE/2591059‑2591239 | atattgagcatggcgattcatgtgcttcatgctaggacatgaaacattctatatggctcgtttttagaacgacagtatatctaaataaatc > 2:1553805‑M1/91‑91 (MQ=255) tttCTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGcac > 2:2794214/1‑91 (MQ=255) tCTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCacac > 2:3103901/1‑91 (MQ=255) tCTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCacac > 1:1645863/1‑91 (MQ=255) cTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACt < 1:3598718/91‑1 (MQ=255) cTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACt < 1:3774511/91‑1 (MQ=255) cTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACt < 2:2486914/91‑1 (MQ=255) aTCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTa < 2:200877/91‑1 (MQ=255) aTCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTa < 1:2308998/91‑1 (MQ=255) tCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTaa > 1:3454863/1‑91 (MQ=255) tCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACGTaa < 2:230666/91‑1 (MQ=255) cAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTaaa < 2:1280480/91‑1 (MQ=255) cAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTaaa > 1:1688067/1‑91 (MQ=255) cAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTaaa > 1:1257956/1‑91 (MQ=255) aaTTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTaaaa < 2:625531/91‑1 (MQ=255) aaTTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTaaaa > 2:1580225/1‑91 (MQ=255) aaTTAGCAGTTATACTCGTTTTGCATACTTTCCTGTAACATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTaaaa > 2:663649/1‑91 (MQ=255) tAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTc < 1:2333747/91‑1 (MQ=255) gCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAg < 2:3366265/91‑1 (MQ=255) aGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATAATCCATACACATCAAAAAGCACACTTAAAAGTCAGTa < 1:3322587/91‑1 (MQ=255) ttATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATc < 1:3943815/91‑1 (MQ=255) aCTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCaaaa < 2:1914425/91‑1 (MQ=255) aCTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCaaaa > 2:2592092/1‑91 (MQ=255) aCTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCaaaa > 2:3597256/1‑91 (MQ=255) cTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAAc > 1:2803288/1‑91 (MQ=255) tcatgctaggacatgaaacattctatatggctcgtttttagaacgacagtatatctaaataaatCACGCTTAAAAGTCAGTATCAAAACTc > 1:765232‑M1/65‑91 (MQ=255) cGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTc < 2:2058022/91‑1 (MQ=255) cGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTc > 2:1362472/1‑91 (MQ=255) cGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTc > 2:837301/1‑91 (MQ=255) cGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACAAAAAAAAAAGCACACTTAAAAGTCAGTATCAAAACTc < 2:2058119/91‑1 (MQ=255) ttttGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCAc < 2:2818239/91‑1 (MQ=255) tttGCATATTTTCATGTAAAATGTTTCAGAGTATTAGCCATTAGCCATACGCATCAAAAAGCACGCTTAAAAGTCAGTATCAAAACTCACt < 2:3317761/91‑1 (MQ=255) ttGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACtt < 1:1072071/91‑1 (MQ=255) gctaggacatgaaacattctatatggctcgtttttagaacgacagtatatctaaataaagCACACTTAAAAGTCAGTATCAAAACTCCCtt > 2:681037‑M1/61‑91 (MQ=255) taggacatgaaacattctatatggctcgtttttagaacgacagtatatctaaataaatCACGCTTAAAAGTCAGTATCAAAACTCACtttt > 2:431859‑M1/59‑91 (MQ=255) gCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACtttt < 2:680269/91‑1 (MQ=255) atatTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTaa > 1:3410538/1‑91 (MQ=255) atTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGc < 1:1313540/91‑1 (MQ=255) atTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGc > 1:790536/1‑91 (MQ=255) ttttCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCg < 2:3762050/91‑1 (MQ=255) tttCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGt < 2:535467/91‑1 (MQ=255) atgaaacattctatatggctcgtttttagaacgacagtatatctaaataaatCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGt > 2:2400699‑M1/53‑91 (MQ=255) tgaaacattctatatggctcgtttttagaacgacagtatatctaaataaatCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTg > 1:177609‑M1/52‑91 (MQ=255) cATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGat > 1:876699/1‑91 (MQ=255) aacattctatatggctcgtttttagaacgacagtatatctaaataaagCACACTTAAAGGTCAGTATCAAAACTCACTTTTAAGCGTGatt > 2:1497746‑M1/49‑91 (MQ=255) aTGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatt < 1:1011591/91‑1 (MQ=255) aTGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatt < 1:2093231/91‑1 (MQ=255) tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt > 1:1057722/1‑91 (MQ=255) tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt > 2:809743/1‑91 (MQ=255) tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt > 2:2648236/1‑91 (MQ=255) tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt > 2:3868371/1‑91 (MQ=255) tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt > 1:2655609/1‑91 (MQ=255) tGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattt > 2:3076867/1‑91 (MQ=255) gTAAAATTTTTCAGAGTATTATCCATTATCCATACACATTAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttc > 2:2343101/1‑90 (MQ=255) gTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGattta > 2:16484/1‑91 (MQ=255) tAAAATTTTTCTGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttat < 1:3587509/91‑1 (MQ=255) tAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttat < 2:1093831/91‑1 (MQ=255) tAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttat > 1:412491/1‑91 (MQ=255) aaaaTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGatttatt > 1:975385/1‑91 (MQ=255) aaTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGAtttattta < 1:3822087/91‑1 (MQ=255) aaTTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGAtttattta > 2:2442206/1‑91 (MQ=255) tttttCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGa < 2:1477846/91‑1 (MQ=255) ttCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGatat > 1:3561511/1‑91 (MQ=255) tCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGAtata < 1:1582787/91‑1 (MQ=255) cAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATAc > 1:2934748/1‑91 (MQ=255) ctcgtttttagaacgacagtatatctaaataaagCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACt > 1:1944957‑M1/35‑91 (MQ=255) gTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTc < 2:2958446/91‑1 (MQ=255) gTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTc < 1:597674/91‑1 (MQ=255) tattatCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCg < 1:680515/91‑1 (MQ=255) tattatCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCg < 2:2975607/91‑1 (MQ=255) tattatCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCg < 2:1701866/91‑1 (MQ=255) attatccattatccATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGt < 2:1779787/91‑1 (MQ=255) ttatccattatccaTACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGtt > 2:3479790/1‑91 (MQ=255) ttatccattatccaTACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGtt < 2:210451/91‑1 (MQ=255) ttatccattatccaTACACATCAAAAAGCACACTTAAAAGTCAGGATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGtt < 1:3137978/91‑1 (MQ=255) tatccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTc < 2:1774994/91‑1 (MQ=255) tatccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTc < 1:333926/91‑1 (MQ=255) tatccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTc < 1:507476/91‑1 (MQ=255) tccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTa < 2:2094049/91‑1 (MQ=255) tccattatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTa > 1:370317/1‑91 (MQ=255) attatccagACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTGTAAGCGTGATTTATTTAGATATACTGTCGTTCTaaaa < 2:3636487/91‑1 (MQ=255) ttatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTaaaaa > 1:741092/1‑91 (MQ=255) tatccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACGCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAAc < 2:2697728/91‑1 (MQ=255) atccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACg > 1:2195391/1‑91 (MQ=255) ccatACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAg > 2:2148029/1‑91 (MQ=255) cacaTCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCata > 1:1472130/1‑91 (MQ=255) cacaTCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTATAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCata > 2:3957359/1‑91 (MQ=255) acaacaAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCatat < 2:1052889/91‑1 (MQ=255) acaTCAAAAAGCACACTTAAAATTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCatat < 1:299352/91‑1 (MQ=255) acaTCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCatat < 1:3516170/91‑1 (MQ=255) tCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGa > 2:2182968/1‑91 (MQ=255) aaaaaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAAt > 1:2385082/1‑91 (MQ=255) aaaaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATg < 1:3088946/91‑1 (MQ=255) aaaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGt > 1:2709841/1‑91 (MQ=255) aaGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGtt > 2:2179420/1‑91 (MQ=255) aGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGttt < 1:2553697/91‑1 (MQ=255) aGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGttt > 1:2749938/1‑91 (MQ=255) gCACACTTAAAAGTCAGTATCAAATCTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTc < 2:3680148/91‑1 (MQ=255) gCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTc < 1:3544712/91‑1 (MQ=255) CACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCa > 1:2476812‑M1/1‑91 (MQ=255) | TATTTCTATCAATTAGCAGTTATACTCGTTTTGCATATTTTCATGTAAAATTTTTCAGAGTATTATCCATTATCCATACACATCAAAAAGCACACTTAAAAGTCAGTATCAAAACTCACTTTTAAGCGTGATTTATTTAGATATACTGTCGTTCTAAAAACGAGCCATATAGAATGTTTCA > USA300TCH1516_ALE/2591059‑2591239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |