| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2605648 = | 229 (1.120) | 31 (0.170) | 15/146 | NT | 13.7% | intergenic (‑442/+10) | ahpD/USA300HOU_RS13415 | Alkyl hydroperoxide reductase AhpD/hypothetical protein |
| ? | USA300TCH1516_ALE | 2605673 = | 183 (0.990) | coding (405/420 nt) | USA300HOU_RS13415 | hypothetical protein | |||||
GGAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2605744‑2605648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAGC > USA300TCH1516_ALE/2605673‑2605762 GGAGTAGATAGATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑AGTC > 1:3564761/1‑91GGAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTC > 2:1526710/1‑91GGAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTC > 1:1778524/1‑91GGAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTC > 1:1777337/1‑91 GAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCT > 1:1070895/1‑91 GAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCT > 2:1682870/1‑91 GAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCT > 1:3883295/1‑91 GAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCT > 1:1474110/1‑91 GAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCT < 1:1591386/91‑1 AGTAGATAAATTATTAAAGCCAGCACATGAAAGAAAATCACCAGAAAAGATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTT < 2:3927446/91‑1 AGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAACGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTg > 2:3912457/1‑90 AGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTT > 2:1733005/1‑91 GTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTC > 1:1810192/1‑91 GTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTC > 1:2310337/1‑91 GTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTC < 2:489423/91‑1 GTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTC > 1:2747144/1‑91 GTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTC < 1:788237/91‑1 GTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTC < 1:744824/91‑1 GTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTC > 1:61116/1‑91 TAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGTAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCT > 2:3121674/1‑91 AGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCTT < 2:1302011/91‑1 AGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCTT < 2:1297748/91‑1 AGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCTT < 2:1030461/91‑1 AGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCTT > 2:2759219/1‑91 GATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCTTT < 1:3274215/91‑1 ATAAATTAGTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCC‑CTAGTGGCCTTCTTTT < 2:2430168/91‑1 AAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGACC‑CTAGTGGCCTTCTTTTTT < 2:1885093/91‑1 TATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCT < 2:2699786/91‑1 ATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTA < 1:978795/91‑1 TTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAA < 1:1785668/91‑1 ACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGA < 1:1377007/91‑1 AAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGG < 2:421900/91‑1 AGAAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTA > 1:1421101/1‑91 AGAAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGCTTTAATAATTTATCTA > 2:1913022/1‑91 GAAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTAC > 1:310041/1‑91 AAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACT > 2:2401124/1‑91 AAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACT > 2:2335306/1‑91 AAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACT > 2:2469202/1‑91 AAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACT > 2:1496755/1‑91 AAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACT > 2:3253074/1‑91 AAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACT > 1:1355054/1‑91 GGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCC > 1:2113198/1‑91 GCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCT > 2:3595827/1‑91 GCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCT > 1:2930801/1‑91 GCCACTAG‑GGTCTTCTTTTTTATCTAAATCTTCTTTGATCTTTTCTCGTTATTTTCTTTCATGTGCTGTTTTTCTTACTTTATCTACTCCT > 2:2262480/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 2:1632073/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 2:3493396/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 1:669013/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 1:668580/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 1:668474/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 2:257697/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 1:14559/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTCTTAATAATTTATCTACTCCTT > 2:1433279/1‑91 CCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTCTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTT > 2:897023/1‑91 CCACTAG‑GGTCTTCTGTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTATCTTTCATGTGCTGGTTTTAACGCTTTATCTGCTCCct > 2:1225234/1‑89 ACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCA > 2:2139847/1‑91 ACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCA > 2:2998461/1‑91 CTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCAC > 1:2998648/1‑91 CTTCTTTTTTATCTAATTCTTCTTTGCTTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTAT > 2:2240865/1‑91 CTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTAT > 1:3627792/1‑91 CTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTAT > 2:1611949/1‑91 TTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATC < 1:501630/91‑1 TTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATC < 2:2286648/91‑1 TCTTTTTTATCTAATTCTTCTTTGATTTTTTTTGGTGTTTTTCTTTCATGTGCTGGTTTTAATAATTTATCTATTCCTTCACTTTTTATCt > 2:2727938/1‑90 TCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCA < 1:1107400/91‑1 TCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCA < 2:565108/91‑1 TCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCA > 2:3074681/1‑91 TCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCA > 2:1760712/1‑91 CTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCAT > 1:290694/1‑91 CTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCAT < 1:2626062/91‑1 TTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATA > 2:2875909/1‑91 TTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAG > 2:761547/1‑91 TTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAGC < 2:135944/91‑1 TTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAGC < 2:2263247/91‑1 GGAGTAGATAAATTATTAAAACCAGCACATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG‑GGTCTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2605744‑2605648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAGC > USA300TCH1516_ALE/2605673‑2605762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |