BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2605648 =	229 (1.120)	31 (0.170)	15/146	NT	13.7%	intergenic (‑442/+10)	ahpD/USA300HOU_RS13415	Alkyl hydroperoxide reductase AhpD/hypothetical protein
*	?	USA300TCH1516_ALE	2605673 =	183 (0.990)	31 (0.170)	15/146	NT	13.7%	coding (405/420 nt)	USA300HOU_RS13415	hypothetical protein

Only 100 of 302 total aligned reads displayed.

GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATC  >  USA300TCH1516_ALE/2605558‑2605738

 ctatgataaaaagtgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaaa                                                                                            >  2:761547‑M1/90‑91 (MQ=255)

  tatgataaaaagtgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaaaa                                                                                           >  2:2875909‑M1/89‑91 (MQ=255)

   atgataaaaagtgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAaag                                                                                          >  1:290694‑M1/88‑91 (MQ=255)

    tgataaaaagtgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAaaga                                                                                         <  2:565108‑M1/5‑1 (MQ=255)

     gataaaaagtgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAaagaa                                                                                        <  1:501630‑M1/6‑1 (MQ=255)

     gataaaaagtgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAaagaa                                                                                        <  2:2286648‑M1/6‑1 (MQ=255)

      ttGGTGATGATGAAGTGATTTATATTAATGGCGAAACACCTACGATAGCAATGACATAGATTATTGGAAGATAAAATAAAAAATAaagaag                                                                                       <  2:3762731/91‑1 (MQ=255)

      ataaaaagtgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaagcaaagaagaattagataaaAaagaag                                                                                       >  2:2240865‑M1/85‑91 (MQ=255)

       tGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAagaaga                                                                                      >  1:2645551/1‑91 (MQ=255)

       tGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAagaaga                                                                                      >  2:151278/1‑91 (MQ=255)

       tGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAagaaga                                                                                      >  1:3628860/1‑91 (MQ=255)

       tGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAagaaga                                                                                      <  1:2220842/91‑1 (MQ=255)

        ggTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGAc                                                                                     >  2:1772263/1‑91 (MQ=255)

         gTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGAcc                                                                                    >  2:3362326/1‑91 (MQ=255)

           gatgatgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑Ct                                                                                 >  1:3810023/1‑91 (MQ=255)

           gatgatgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑Ct                                                                                 >  1:793655/1‑91 (MQ=255)

           gatgatgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑Ct                                                                                 <  2:2269333/91‑1 (MQ=255)

           gatgatgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑Ct                                                                                 <  2:1845724/91‑1 (MQ=255)

             tgatgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAg                                                                               >  2:1425977/1‑91 (MQ=255)

              tgaaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAAAGAAGACC‑CTAGt                                                                              >  2:2998461‑M1/77‑91 (MQ=255)

               atgaAGTGGTTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTg                                                                             <  2:2626981/91‑1 (MQ=255)

               atgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTg                                                                             <  1:1123450/91‑1 (MQ=255)

                tgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTgg                                                                            >  2:2559693/1‑91 (MQ=255)

                tgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTgg                                                                            <  2:1883959/91‑1 (MQ=255)

                aaggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAAAGAAGACC‑CTAGTgg                                                                            >  1:669013‑M1/75‑91 (MQ=255)

                 gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                           <  1:3661922/91‑1 (MQ=255)

                  ggagtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAAAGAAGACC‑CTAGTGGcc                                                                          >  1:2113198‑M1/73‑91 (MQ=255)

                  aaGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGcc                                                                          >  2:1910140/1‑91 (MQ=255)

                  aaGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGcc                                                                          <  1:3254033/91‑1 (MQ=255)

                  aaGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGcc                                                                          >  1:226880/1‑91 (MQ=255)

                   aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCct                                                                         >  2:1330928/1‑91 (MQ=255)

                   aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCct                                                                         >  1:2606901/1‑91 (MQ=255)

                   aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCct                                                                         >  2:1448907/1‑91 (MQ=255)

                   aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCct                                                                         >  2:3462923/1‑91 (MQ=255)

                    agtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAAAGAAGACC‑CTAGTGGCctt                                                                        >  2:3253074‑M1/71‑91 (MQ=255)

                    agtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAAAGAAGACC‑CTAGTGGCctt                                                                        >  2:2401124‑M1/71‑91 (MQ=255)

                    agtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAAAGAAGACC‑CTAGTGGCctt                                                                        >  2:2335306‑M1/71‑91 (MQ=255)

                     gtagataaattattaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaAAAGAAGACC‑CTAGTGGCcttc                                                                       >  1:310041‑M1/70‑91 (MQ=255)

                      gATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttct                                                                      <  2:2465471/91‑1 (MQ=255)

                       aTTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttctt                                                                     >  1:1187827/1‑91 (MQ=255)

                       aTTTATATTAATTGCGAAACACCTTCAATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttctt                                                                     <  2:1617141/91‑1 (MQ=255)

                       aTTTATATTAAGTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctt                                                                     <  1:2394491/91‑1 (MQ=38)

                         ttATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCtttt                                                                   >  2:3064437/1‑91 (MQ=255)

                         ttATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCtttt                                                                   <  1:3914044/91‑1 (MQ=255)

                          tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAAGAAAGAAGGCCACTAG‑GGTCTTCtttat                                                                  <  1:1058050/91‑3 (MQ=37)

                            tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                >  2:1293834/1‑91 (MQ=255)

                             atTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTAt                                                               >  2:2768421/1‑91 (MQ=255)

                                aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                            >  1:3348300/1‑91 (MQ=255)

                                aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                            <  1:1881642/91‑1 (MQ=255)

                                 aTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTaa                                                           <  2:2175383/91‑1 (MQ=255)

                                  ttGCGAAGCACCTGCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAt                                                          <  2:1640696/91‑1 (MQ=255)

                                    gCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttc                                                        >  1:1724443/1‑91 (MQ=255)

                                       aaaCACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttcttc                                                     <  2:2298423/91‑1 (MQ=255)

                                       aaaCACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAAATAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttcttc                                                     >  2:3849878/1‑91 (MQ=255)

                                        aaCACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATtcttct                                                    >  2:2131482/1‑91 (MQ=255)

                                         acacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTcttctt                                                   <  1:3610709/91‑1 (MQ=255)

                                         acacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTcttctt                                                   <  1:1453998/91‑1 (MQ=255)

                                          cacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCttt                                                  >  2:1706161/1‑91 (MQ=255)

                                           acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                 <  1:2306603/91‑1 (MQ=255)

                                           acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                 >  1:1317736/1‑91 (MQ=255)

                                            ccTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGa                                                <  2:1361249/91‑1 (MQ=255)

                                            ccTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGa                                                <  2:369612/91‑1 (MQ=255)

                                             cTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAt                                               >  2:1945421/1‑91 (MQ=255)

                                              ttCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAtt                                              >  1:2816057/1‑91 (MQ=255)

                                               tCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAttt                                             >  2:1804493/1‑91 (MQ=255)

                                                cGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAtttt                                            <  1:3247787/91‑1 (MQ=255)

                                                   tAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTc                                         <  2:3733307/91‑1 (MQ=255)

                                                    aGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCt                                        <  1:269988/91‑1 (MQ=255)

                                                     gCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTg                                       >  1:761606/1‑91 (MQ=255)

                                                       aaTGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTACTTCTTCTTTGATTTTTTCTGGt                                     >  2:3183284/1‑91 (MQ=255)

                                                          gACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAt                                  >  2:3943966/1‑91 (MQ=255)

                                                           aCATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtt                                 <  2:3610582/91‑1 (MQ=255)

                                                           aCATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtt                                 <  1:2426779/91‑1 (MQ=255)

                                                            ccagaaaaaatcaaagaagaattagataaaAAAGAAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAttt                                <  2:421900‑M1/61‑1 (MQ=255)

                                                                 attattGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATtttcttt                           <  2:674872/91‑1 (MQ=255)

                                                                   tattGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTTTTGTTTTTCTTTCa                         >  2:1595018/1‑91 (MQ=255)

                                                                    attGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAt                        >  1:2144734/1‑91 (MQ=255)

                                                                     ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                       <  1:3264023/91‑1 (MQ=255)

                                                                     ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                       <  2:119799/91‑1 (MQ=255)

                                                                      tcaaagaagaattagataaaAAAGAAGGCCACTAG‑GGTCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                      <  1:1377007‑M1/71‑1 (MQ=255)

                                                                      tGGAAGATTAAATCAAAAATAAAGAAGTCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                      <  2:2154110/91‑1 (MQ=255)

                                                                      tGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                      <  1:96690/91‑1 (MQ=255)

                                                                      tGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                      <  1:1688199/91‑1 (MQ=255)

                                                                      tGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                      <  1:1520082/91‑1 (MQ=255)

                                                                      tGGAAGACTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                      <  1:1960287/91‑1 (MQ=255)

                                                                        gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCGTGTGc                    <  1:604804/91‑1 (MQ=255)

                                                                        gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                    <  1:65062/91‑1 (MQ=255)

                                                                        gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                    <  1:2978282/91‑1 (MQ=255)

                                                                        gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                    >  1:2079221/1‑91 (MQ=255)

                                                                         aaGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATATGCt                   >  1:3296446/1‑91 (MQ=255)

                                                                          aGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTg                  >  1:1093584/1‑91 (MQ=255)

                                                                              tAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGttt              <  1:1461146/91‑1 (MQ=255)

                                                                               aaaTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGtttt             >  2:1159131/1‑91 (MQ=255)

                                                                               aaaTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGtttt             >  1:889883/1‑91 (MQ=255)

                                                                               aaaTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGtttt             >  1:3761423/1‑91 (MQ=255)

                                                                                 ttagataaaAAAGAAGGCCACTAG‑GGTCTTCTTTATTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa           <  1:1785668‑M1/82‑1 (MQ=255)

                                                                                      aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt      >  2:3510891/1‑91 (MQ=255)

                                                                                      aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt      <  2:1021711/91‑1 (MQ=255)

                                                                                       aaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAttt     >  1:3437650/1‑91 (MQ=255)

                                                                                         aAAAGAAGGCCACTAG‑GGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTACTAATTTAt   <  2:2430168‑M1/90‑1 (MQ=255)

GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATC  >  USA300TCH1516_ALE/2605558‑2605738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.