BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2605648 =	229 (1.120)	31 (0.170)	15/146	NT	13.7%	intergenic (‑442/+10)	ahpD/USA300HOU_RS13415	Alkyl hydroperoxide reductase AhpD/hypothetical protein
*	?	USA300TCH1516_ALE	2605673 =	183 (0.990)	31 (0.170)	15/146	NT	13.7%	coding (405/420 nt)	USA300HOU_RS13415	hypothetical protein

Only 100 of 284 total aligned reads displayed.

TTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAGCG  >  USA300TCH1516_ALE/2605583‑2605763

ttATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCtttt                                                                                            <  1:3913988/91‑1 (MQ=255)

 tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCttttt                                                                                           >  2:2798760/1‑91 (MQ=255)

 ataaattagtaaaaccagcacatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaaaagaaggccctagtggccttctttt                                                                                            <  2:2430168‑M2/1‑1 (MQ=255)

   tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                                         >  2:1293834/1‑91 (MQ=255)

       aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                                     >  1:3348015/1‑91 (MQ=255)

       aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                                     <  1:1881642/91‑1 (MQ=255)

         ttGCGAAGCACCTGCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAt                                                                                   <  2:1640696/91‑1 (MQ=255)

          tGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAtt                                                                                  <  2:1056169/91‑1 (MQ=255)

           gCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttc                                                                                 >  2:1906820/1‑91 (MQ=255)

           gCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttc                                                                                 >  1:1724443/1‑91 (MQ=255)

            cGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttct                                                                                <  2:2311378/91‑1 (MQ=255)

              aaaCACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAAATAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttcttc                                                                              >  2:3849878/1‑91 (MQ=255)

               aaCACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATtcttct                                                                             >  2:2131482/1‑91 (MQ=255)

               aaCACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATtcttct                                                                             >  2:3232364/1‑91 (MQ=255)

               aaCACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATacttct                                                                             >  2:1868656/1‑91 (MQ=255)

                acacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTcttctt                                                                            <  1:1453998/91‑1 (MQ=255)

                 cacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCttt                                                                           >  2:1706161/1‑91 (MQ=255)

                  acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                                          >  1:900539/1‑91 (MQ=255)

                  acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                                          <  1:2306603/91‑1 (MQ=255)

                   ccTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGa                                                                         <  2:158258/91‑1 (MQ=255)

                   ccTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGa                                                                         <  2:1361249/91‑1 (MQ=255)

                   ccTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGa                                                                         <  2:369612/91‑1 (MQ=255)

                    cTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAt                                                                        >  2:1945421/1‑91 (MQ=255)

                    cTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAt                                                                        >  2:3924456/1‑91 (MQ=255)

                    acatgaaagaaaatcaccagaaaaaatcaaagaagaattagataaaaaagaagaccctagtggccttctttTTTATCTAATTCTTCTTTGa                                                                         <  1:1377007‑M2/20‑1 (MQ=255)

                     ttCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAtt                                                                       <  2:2948368/91‑1 (MQ=255)

                      tCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAttt                                                                      >  1:2401701/1‑91 (MQ=255)

                      tCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAttt                                                                      >  1:2218247/1‑91 (MQ=255)

                      tCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAttt                                                                      >  2:2280542/1‑91 (MQ=255)

                       cGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAtttt                                                                     <  2:1794378/91‑1 (MQ=255)

                        gATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTGTCTAATTCTTCTTTGAttttt                                                                    <  1:544107/91‑1 (MQ=255)

                          tAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTc                                                                  <  2:3733307/91‑1 (MQ=255)

                           aGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCt                                                                 <  1:269988/91‑1 (MQ=255)

                              aaatcaccagaaaaaatcaaagaagaattagataaaaaagaagaccctagtggccttctttTTTATCTAATTCTTCTTTGATTTTTTCTgg                                                               <  2:421900‑M2/30‑1 (MQ=255)

                                tGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGa                                                            <  2:147826/91‑1 (MQ=255)

                                    aTAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtttt                                                        <  2:3755449/91‑1 (MQ=255)

                                    aTAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtttt                                                        >  1:771348/1‑91 (MQ=255)

                                        attattGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATtttcttt                                                    <  2:674872/91‑1 (MQ=255)

                                          tgtgggAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCa                                                  <  2:2448605/87‑1 (MQ=255)

                                           attGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAt                                                 >  1:2145140/1‑91 (MQ=255)

                                            ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGTTTTTCTTTCAtg                                                >  1:3574596/1‑91 (MQ=255)

                                            ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                                                <  1:808555/91‑1 (MQ=255)

                                            ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                                                <  1:3264023/91‑1 (MQ=255)

                                             tGGAAGATTAAATCAAAAATAAAGAAGTCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                                               <  2:2154110/91‑1 (MQ=255)

                                             tGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                                               <  1:1688199/91‑1 (MQ=255)

                                             tGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCATTGATTTTTTCTGGTGTTTTTCTTTCAtgt                                               >  2:3948225/1‑91 (MQ=255)

                                             tGGAAGACTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                                               <  1:1960287/91‑1 (MQ=255)

                                              ggAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgtg                                              >  2:2168065/1‑91 (MQ=255)

                                               gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                             <  1:65062/91‑1 (MQ=255)

                                               gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                             <  1:2978282/91‑1 (MQ=255)

                                               gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                             >  2:1177753/1‑91 (MQ=255)

                                               gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                             >  1:2079221/1‑91 (MQ=255)

                                                aaGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATATGCt                                            >  1:3296446/1‑91 (MQ=255)

                                                 aGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTg                                           >  1:3709185/1‑91 (MQ=255)

                                                     tAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGttt                                       <  1:1461146/91‑1 (MQ=255)

                                                     tAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGttt                                       <  1:707110/91‑1 (MQ=255)

                                                      aaaTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGtttt                                      >  1:3761423/1‑91 (MQ=255)

                                                       aaTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTta                                     >  2:3012941/1‑91 (MQ=255)

                                                        ttagataaaAAAGAAGGCCACTAG‑GGTCTTCTTTATTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                                    <  1:1785668‑M1/82‑1 (MQ=255)

                                                        aTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                                    <  1:1317988/91‑1 (MQ=255)

                                                        aTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                                    >  2:2291659/1‑91 (MQ=255)

                                                        aTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                                    >  1:1085005/1‑91 (MQ=255)

                                                         tagataaaAAAGAAGGCCACTAG‑GGTCTTCTTTATTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaat                                   <  1:978795‑M1/83‑1 (MQ=255)

                                                           aaaaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaataa                                 <  1:1564074/91‑1 (MQ=255)

                                                             aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt                               <  2:1021711/91‑1 (MQ=255)

                                                              aaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAttt                              >  1:3437650/1‑91 (MQ=255)

                                                                  AAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCt                          <  2:1302011‑M1/91‑1 (MQ=255)

                                                                    GAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTAc                        <  2:489423‑M1/91‑1 (MQ=255)

                                                                    GAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTAc                        >  1:1810192‑M1/1‑91 (MQ=255)

                                                                    GAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTAc                        >  1:61116‑M1/1‑91 (MQ=255)

                                                                    GAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTAc                        >  1:2747144‑M1/1‑91 (MQ=255)

                                                                     gaaggccactagggtcttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTAc                        >  1:310041‑M2/23‑91 (MQ=255)

                                                                      aaggccactagggtcttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACt                       >  2:2401124‑M2/22‑91 (MQ=255)

                                                                      AGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc                      >  1:1070895‑M1/1‑91 (MQ=255)

                                                                      AGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc                      >  1:1474110‑M1/1‑91 (MQ=255)

                                                                        ggccactagggtcttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTcc                     >  1:2113198‑M2/20‑91 (MQ=255)

                                                                        aCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCt                    <  2:77240/91‑1 (MQ=255)

                                                                        aCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCt                    <  2:3642817/91‑1 (MQ=255)

                                                                        aCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATATACTCCt                    >  2:3518245/1‑91 (MQ=255)

                                                                        aCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAACTTATCTACTCCt                    >  2:3289237/1‑91 (MQ=255)

                                                                         cc‑cTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCtt                   <  1:3194507/91‑1 (MQ=255)

                                                                          ccactagggtcttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCtt                   >  1:668580‑M2/18‑91 (MQ=255)

                                                                          ccactagggtcttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCtt                   >  2:3493396‑M2/18‑91 (MQ=255)

                                                                          ccactagggtcttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCtt                   >  2:257697‑M2/18‑91 (MQ=255)

                                                                          ccactagggtcttctgtTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTATCTTTCATGTGCTGGTTTTAACGCTTTATCTGctccct                   >  2:1225234‑M2/18‑89 (MQ=255)

                                                                          c‑cTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTc                  <  1:3620670/91‑1 (MQ=255)

                                                                             tAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCAc                >  1:401633/1‑91 (MQ=255)

                                                                                 ggCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACtttt            <  1:2481130/91‑1 (MQ=255)

                                                                                 ggCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACtttt            <  2:269485/91‑1 (MQ=255)

                                                                                  gCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACttttt           >  2:1778788/1‑91 (MQ=255)

                                                                                   ccTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTa          <  1:1765441/91‑1 (MQ=255)

                                                                                    cttctttTTTATCTAATTCTTCTTTGCTTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTAt         >  2:2240865‑M2/8‑91 (MQ=255)

                                                                                    cttctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTAt         >  2:1611949‑M2/8‑91 (MQ=255)

                                                                                      tctttTTTATCTAATTCTTCTTTGATTTTTTTTGGTGTTTTTCTTTCATGTGCTGGTTTTAATAATTTATCTATTCCTTCACTTTTTAtct       >  2:2727938‑M2/6‑90 (MQ=255)

                                                                                      tctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCa       >  2:3074681‑M2/6‑91 (MQ=255)

                                                                                      tctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCa       <  1:1107400‑M2/86‑1 (MQ=255)

                                                                                       ctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCAt      <  1:2626062‑M2/87‑1 (MQ=255)

                                                                                       ctttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCAt      >  1:290694‑M2/5‑91 (MQ=255)

                                                                                        tttTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATa     >  2:2875909‑M2/4‑91 (MQ=255)

                                                                                           tttATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAgcg  <  1:3385733/91‑1 (MQ=255)

TTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTATCATAGCG  >  USA300TCH1516_ALE/2605583‑2605763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.