| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2651119 = | 183 (0.900) | 10 (0.050) | 5/146 | NT | 5.5% | intergenic (+62/‑311) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 |
| ? | USA300TCH1516_ALE | 2651153 = | 176 (0.950) | intergenic (+96/‑277) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 | |||||
ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2651215‑2651119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAA > USA300TCH1516_ALE/2651153‑2651242 ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG < 2:2986047/91‑1ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG > 1:669688/1‑91ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG > 2:1700567/1‑91ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG > 1:669689/1‑91ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG > 2:1700538/1‑91ATTCACTAGTTTCCTAAAAAATTACGATAAGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAG < 1:3179115/91‑1 TTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGG < 2:3436233/91‑1 TTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGG < 1:204664/91‑1 TTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGG < 1:2190515/91‑1 TCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGG < 1:2293447/91‑1 CACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGA < 2:1272870/91‑1 ACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGAT > 2:2668093/1‑91 ACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGAT < 1:636063/91‑1 ACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGAT > 1:166876/1‑91 CTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATT < 1:603774/91‑1 TAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT < 1:1645697/91‑1 TAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT < 1:3882896/91‑1 TAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT < 1:3882850/91‑1 AATCCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAG > 1:466213/1‑91 CCCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGA > 1:739039/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAA > 1:1022236/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAA > 2:2163694/1‑91 CCCGCACCATTAATTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAA > 1:3043686/1‑91 CCGCACTATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGACATTCCACATTTTACATATCGTAATTTTTTAGGAAATTAGCGAAT > 2:2781358/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAT > 1:2553763/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAT > 1:2551974/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTCTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAT > 1:3429523/1‑91 CGCACCATTATTTGGGTGAAGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATA > 2:911022/1‑91 GGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGCATATAACAAATCCCTCCTCTCAT > 2:1577526/1‑91 GGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAT < 2:3767871/91‑1 GGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAT < 2:3767946/91‑1 GGATTTTTTCATCCAAATTTTGGAAATTCCCCATTTTACATATCGTACTTTTTTAGGAAACTAGAGAATATCACACATCCCTCCACCCATT > 2:2307849/1‑91 GGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATT > 1:2431472/1‑91 GGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATT < 2:600366/91‑1 GGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATT < 2:600367/91‑1 GGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATT < 2:3110968/91‑1 GATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTT < 2:1167092/91‑1 GATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTT < 2:1332199/91‑1 GATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTT < 2:2446434/91‑1 ATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTT < 1:2266123/91‑1 ATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTT < 1:1865051/91‑1 ATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTT < 1:1865086/91‑1 ATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTT < 1:815869/91‑1 TTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTT > 1:577771/1‑91 TTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTT < 1:3709925/91‑1 TTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTA > 2:1409221/1‑91 TTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTA < 2:618622/91‑1 TTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAA < 1:3015156/91‑1 TTTTCATCCAAATTTTGGAAATGCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAA < 2:3184448/91‑1 ATTCACTAGTTTCCTAAAAAATTACGATATGTAAAATGTGGAATTTCCAAAATTTGGATGAAAAAATCCCCGCACCATTATTTGGGTGAAGGGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2651215‑2651119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatttTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAA > USA300TCH1516_ALE/2651153‑2651242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |