New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2651119 =183 (0.900)10 (0.050) 5/146 NT 5.5% intergenic (+62/‑311) USA300HOU_RS13635/fbp hypothetical protein/Fructose‑1,6‑bisphosphatase class 3
?USA300TCH1516_ALE 2651153 = 176 (0.950)intergenic (+96/‑277) USA300HOU_RS13635/fbp hypothetical protein/Fructose‑1,6‑bisphosphatase class 3

Only 100 of 279 total aligned reads displayed.

TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTA  >  USA300TCH1516_ALE/2651029‑2651209
                                                                                          |                                                                                          
tatttattTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCA                                                                                            <  2:2532325‑M1/91‑1 (MQ=255)
 taaaaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaaa                                                                                           <  2:618622‑M1/2‑1 (MQ=255)
 atttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA                                                                                           >  2:3175884‑M1/1‑91 (MQ=255)
 atttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA                                                                                           >  2:3492271‑M1/1‑91 (MQ=255)
  tttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA                                                                                          <  1:2993386‑M1/91‑1 (MQ=255)
  tttatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA                                                                                          <  2:2812509‑M1/91‑1 (MQ=255)
  aaaaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaaaa                                                                                          <  1:3709925‑M1/3‑1 (MQ=255)
   aaaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAAt                                                                                         <  1:1865051‑M1/4‑1 (MQ=255)
    tatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC                                                                                        <  1:494721‑M1/91‑1 (MQ=255)
    tatttTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC                                                                                        <  1:3909754‑M1/91‑1 (MQ=255)
    aaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATc                                                                                        <  2:1167092‑M1/5‑1 (MQ=255)
    aaatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATc                                                                                        <  2:2446434‑M1/5‑1 (MQ=255)
     aatgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATcc                                                                                       <  2:3110968‑M1/6‑1 (MQ=255)
      ttttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC                                                                                      >  2:3187241‑M1/1‑91 (MQ=255)
      atgagaggagggatttgttatatgcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATccc                                                                                      >  2:1577526‑M1/85‑91 (MQ=255)
        ttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAGATGTCTATATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCtt                                                                                    <  2:3570889/91‑1 (MQ=255)
         tCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTc                                                                                   >  2:1839139/1‑91 (MQ=255)
         tCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTc                                                                                   <  1:2611444/91‑1 (MQ=255)
          cAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCa                                                                                  <  2:3322233/91‑1 (MQ=255)
          cAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCa                                                                                  >  1:2277868/1‑91 (MQ=255)
           aagaagAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAc                                                                                 >  1:2740788/1‑91 (MQ=255)
           aagaagAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAc                                                                                 <  2:574224/91‑1 (MQ=255)
            agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc                                                                                >  1:573569/1‑91 (MQ=255)
             gaagaaAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAccc                                                                               >  2:2956698/1‑91 (MQ=255)
                    aaTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAaataat                                                                        >  2:3076479/1‑91 (MQ=255)
                     atatTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCttcaccattatttgg                                                                       <  1:147389‑M1/91‑16 (MQ=255)
                       atTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGt                                                                     >  1:2381399/1‑91 (MQ=255)
                       atTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGt                                                                     >  2:2493663/1‑91 (MQ=255)
                         ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGc                                                                   >  1:732744/1‑91 (MQ=255)
                          tattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCg                                                                  >  2:911022‑M1/65‑91 (MQ=255)
                          tAGTAACTTAAAGTATTAAATGTCTACTGACGCACATATTCCATCGTAATTCAAAATCATTTGCAATTCCGTTCACCCAAATGCTGGTGCg                                                                  <  2:2289579/91‑1 (MQ=255)
                          tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg                                                                  <  2:1896985/91‑1 (MQ=255)
                          tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg                                                                  <  1:3763947/91‑1 (MQ=255)
                           attcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCgg                                                                 >  1:2553763‑M1/64‑91 (MQ=255)
                           aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAGTCCCTTCACCCAAATAATGGTGCGg                                                                 <  1:3688544‑M2/91‑2 (MQ=255)
                           aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtgaag                                                                 <  2:659382‑M1/91‑22 (MQ=255)
                           aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg                                                                 <  1:533958‑M2/91‑2 (MQ=255)
                           aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg                                                                 >  1:208042‑M2/1‑90 (MQ=255)
                            ttcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAATTAATGGTGCggg                                                                >  1:3043686‑M1/63‑91 (MQ=255)
                            gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                >  1:1852151‑M2/1‑89 (MQ=255)
                            gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                >  1:2416414‑M2/1‑89 (MQ=255)
                               aCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgggat                                                             <  1:3218985‑M2/91‑6 (MQ=255)
                               aCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgggat                                                             <  1:3817971‑M2/91‑6 (MQ=255)
                                        aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc                                                    <  1:188657/91‑1 (MQ=255)
                                        aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc                                                    >  2:3441618/1‑91 (MQ=255)
                                         ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATcc                                                   <  1:65391/91‑1 (MQ=255)
                                          tAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCa                                                  <  1:3001000/91‑1 (MQ=255)
                                          tAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCa                                                  <  1:3562273/91‑1 (MQ=255)
                                           aaaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaa                                                 >  2:3961401/1‑91 (MQ=255)
                                            aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa                                                >  1:3771535/1‑91 (MQ=255)
                                            aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa                                                >  2:1387173/1‑91 (MQ=255)
                                              tGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAtt                                              >  1:3484563/1‑91 (MQ=255)
                                               gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                             <  1:3933659/91‑1 (MQ=255)
                                                tCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAtttt                                            <  1:102668/91‑1 (MQ=255)
                                                 cTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTg                                           <  2:1112007/91‑1 (MQ=255)
                                                  tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTgg                                          >  1:82203/1‑91 (MQ=255)
                                                  tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTgg                                          >  1:3865073/1‑91 (MQ=255)
                                                  tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTgg                                          >  1:1691351/1‑91 (MQ=255)
                                                    aaTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGaa                                        >  1:1900604/1‑91 (MQ=255)
                                                     aTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGaaa                                       >  2:1041530/1‑91 (MQ=255)
                                                      tACACGCATATTCCATCGTAATTCAAGATCATTTTCACAGCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCAGCCAAATTTTGGAAAt                                      <  2:1070332/91‑1 (MQ=255)
                                                        cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                    <  1:912431/91‑1 (MQ=255)
                                                        cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                    <  2:2211084/91‑1 (MQ=255)
                                                        cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTACGGGGATTTTTTCATCCAAATTTTGGAAATTc                                    >  2:3456891/1‑91 (MQ=255)
                                                         acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                   <  2:2601990/91‑1 (MQ=255)
                                                         acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                   >  1:758305/1‑91 (MQ=255)
                                                         acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                   <  1:1100372/91‑1 (MQ=255)
                                                         acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                   <  2:1659131/91‑1 (MQ=255)
                                                          cacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCca                                  <  1:1842372/91‑1 (MQ=255)
                                                           acaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCcac                                 <  2:2912928/91‑1 (MQ=255)
                                                             atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt                               >  1:2167627/1‑91 (MQ=255)
                                                                 tCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATACTGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTa                           <  2:2379090/91‑1 (MQ=255)
                                                                  ccATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTGTAc                          >  1:3185942/1‑91 (MQ=255)
                                                                   cATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACa                         <  2:1778617/91‑1 (MQ=255)
                                                                    aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                        >  1:3303045/1‑91 (MQ=255)
                                                                    aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                        >  1:1231024/1‑91 (MQ=255)
                                                                     tCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCCCATTTTACata                       >  2:2020069/1‑91 (MQ=255)
                                                                      cGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACatat                      <  1:2544191/91‑1 (MQ=255)
                                                                      cGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACatat                      >  1:3530869/1‑91 (MQ=255)
                                                                       gTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATc                     <  1:622711/91‑1 (MQ=255)
                                                                         aaTTCAAAATCATTTTCAACTCCCTTCACCCAAATAATGGTGCGGGGCTTTTTTCATCCAACTTTTGGCAATTCCACATTTTACATATCGt                   >  2:491021/1‑91 (MQ=255)
                                                                         aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                   <  1:3651568/91‑1 (MQ=255)
                                                                         aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                   <  2:303472/91‑1 (MQ=255)
                                                                           ttCAAAATCATTTTCAAATCCCTTCACCCAAATAATGATGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTaa                 >  1:3346269/1‑91 (MQ=255)
                                                                            tCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAt                >  2:208294/1‑91 (MQ=255)
                                                                             cAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACCTTTTACATATCGTAAtt               >  1:3389195/1‑91 (MQ=255)
                                                                               aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt             <  2:759057/91‑1 (MQ=255)
                                                                                aaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAttttt            <  1:1633169/91‑1 (MQ=255)
                                                                                  tCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTa          >  2:2751872/1‑91 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         <  2:3915169/91‑1 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         <  2:1928394/91‑1 (MQ=255)
                                                                                   cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTAATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg         <  1:3640350/91‑1 (MQ=255)
                                                                                    aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg        <  2:2945623/91‑1 (MQ=255)
                                                                                     ttttCAAATCCCTTCACCCAAATACTGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATCACGTAATTTTTGAGGa       >  2:3733322/1‑91 (MQ=255)
                                                                                     ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa       <  1:1430562/91‑1 (MQ=255)
                                                                                      tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa      >  1:1676/1‑91 (MQ=255)
                                                                                      tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa      >  1:10/1‑91 (MQ=255)
                                                                                       ttCAAATCCCTTCACCCAACTAATGGCGCGGGGATTTTTTCATCCAACTTTTGGAAATTCCAAATTATACATCTCGTAATTTTTTTGGtaa     >  2:3814242/1‑91 (MQ=255)
                                                                                        tCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAAc    <  1:919265/91‑1 (MQ=255)
                                                                                         cAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatacttta   <  2:941226‑M2/91‑64 (MQ=255)
                                                                                          |                                                                                          
TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTA  >  USA300TCH1516_ALE/2651029‑2651209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.