BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2651119 =	183 (0.900)	10 (0.050)	5/146	NT	5.5%	intergenic (+62/‑311)	USA300HOU_RS13635/fbp	hypothetical protein/Fructose‑1,6‑bisphosphatase class 3
*	?	USA300TCH1516_ALE	2651153 =	176 (0.950)	10 (0.050)	5/146	NT	5.5%	intergenic (+96/‑277)	USA300HOU_RS13635/fbp	hypothetical protein/Fructose‑1,6‑bisphosphatase class 3

Only 100 of 248 total aligned reads displayed.

TAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAAA  >  USA300TCH1516_ALE/2651063‑2651243

tAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGAtttt                                                                                             >  1:559314/1‑91 (MQ=255)

  aaGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGAtttttt                                                                                           >  2:2393823/1‑91 (MQ=255)

   aGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑c                                                                                         >  2:1781278/1‑91 (MQ=255)

    gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑Ca                                                                                        <  1:154147/91‑1 (MQ=255)

    gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑Ca                                                                                        >  2:2507873/1‑91 (MQ=255)

      aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCTTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATc                                                                                      <  1:2129955/91‑1 (MQ=255)

      aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATc                                                                                      >  2:3441618/1‑91 (MQ=255)

       ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATcc                                                                                     <  1:2555934/91‑1 (MQ=255)

       ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATcc                                                                                     <  1:65391/91‑1 (MQ=255)

       ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATcc                                                                                     >  1:3314306/1‑91 (MQ=255)

       ttAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATcc                                                                                     <  1:2411928/91‑1 (MQ=255)

        tAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCa                                                                                    >  2:87918/1‑91 (MQ=255)

        tAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCa                                                                                    <  1:3562273/91‑1 (MQ=255)

         aaaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCaa                                                                                   >  2:1082728/1‑91 (MQ=255)

         aaaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCaa                                                                                   >  2:3961401/1‑91 (MQ=255)

          aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCaaa                                                                                  >  1:517303/1‑91 (MQ=255)

          aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCaaa                                                                                  >  2:1387173/1‑91 (MQ=255)

          aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCaaa                                                                                  >  1:3771535/1‑91 (MQ=255)

          aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCaaa                                                                                  >  1:744095/1‑91 (MQ=255)

           aTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAAt                                                                                 >  1:202326/1‑91 (MQ=255)

             gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCATAttt                                                                               <  1:3117218/91‑1 (MQ=255)

              tCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAAtttt                                                                              <  2:2904364/91‑1 (MQ=255)

                tAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTgg                                                                            >  1:1691351/1‑91 (MQ=255)

                  aaTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGaa                                                                          >  1:1900604/1‑91 (MQ=255)

                   aTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGaaa                                                                         >  2:1042295/1‑91 (MQ=255)

                     acacacATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAAtt                                                                       <  2:24753/91‑1 (MQ=255)

                      cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCGAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTc                                                                      <  2:3052617/91‑1 (MQ=255)

                      cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTc                                                                      <  2:2211084/91‑1 (MQ=255)

                      cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTACGGGGATTTTTT‑CATCCAAATTTTGGAAATTc                                                                      >  2:3456891/1‑91 (MQ=255)

                       acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTcc                                                                     <  2:2601990/91‑1 (MQ=255)

                       acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTcc                                                                     >  1:104529/1‑91 (MQ=255)

                          caTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCcaca                                                                  <  1:1261233/91‑1 (MQ=255)

                           atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACAt                                                                 >  1:3097869/1‑91 (MQ=255)

                           atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACAt                                                                 >  2:2809293/1‑91 (MQ=255)

                            tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACAtt                                                                <  2:3695403/91‑1 (MQ=255)

                                ccATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTAc                                                            >  1:847770/1‑91 (MQ=255)

                                  aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACat                                                          >  1:3302939/1‑91 (MQ=255)

                                  aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACat                                                          >  2:841639/1‑91 (MQ=255)

                                  aTCGTAATTCAAAATCATTTTAAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACat                                                          >  1:1173540/1‑91 (MQ=255)

                                   tCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑AATCCAAATTTTGGAAATTACACATTTTACata                                                         >  1:3369516/1‑91 (MQ=255)

                                    cGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACatat                                                        >  1:3530536/1‑91 (MQ=255)

                                      tAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCg                                                      <  2:2949145/91‑1 (MQ=255)

                                       aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTTCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGt                                                     <  2:712635/91‑1 (MQ=255)

                                       aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGt                                                     <  1:3651905/91‑1 (MQ=255)

                                          tCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGCTTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAt                                                  >  2:208089/1‑91 (MQ=255)

                                             aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt                                               <  2:759057/91‑1 (MQ=255)

                                               aTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttttt                                             >  1:1875176/1‑91 (MQ=255)

                                                tCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTa                                            >  2:2751872/1‑91 (MQ=255)

                                                 cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  2:1928394/91‑1 (MQ=255)

                                                 cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  1:1621619/91‑1 (MQ=255)

                                                 cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑AATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg                                           <  1:3640350/91‑1 (MQ=255)

                                                  aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg                                          >  1:3753711/1‑91 (MQ=255)

                                                   ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa                                         >  2:2288880/1‑91 (MQ=255)

                                                   ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa                                         <  1:1430562/91‑1 (MQ=255)

                                                    tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa                                        >  1:1676/1‑91 (MQ=255)

                                                    tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa                                        >  1:10/1‑91 (MQ=255)

                                                     ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAACTTTTTCGGaaa                                       >  2:19806/1‑91 (MQ=255)

                                                      tCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAAc                                      <  1:919200/91‑1 (MQ=255)

                                                        AAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTa                                    <  1:1645697‑M1/91‑1 (MQ=255)

                                                        AAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTa                                    <  1:3882850‑M1/91‑1 (MQ=255)

                                                          ATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGt                                  >  2:2668093‑M1/1‑91 (MQ=255)

                                                             cccgcaccattatttgggtgaagggatttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGaa                               >  1:1022236‑M2/30‑91 (MQ=255)

                                                             CCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGaa                               <  1:2190515‑M1/91‑1 (MQ=255)

                                                              ccgcaccattatttgggtgaagggatttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAat                              >  1:2551974‑M2/29‑91 (MQ=255)

                                                              ccgcaccattatttgggtgaagggatttTTT‑CATCCAAATTCTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAat                              >  1:3429523‑M2/29‑91 (MQ=255)

                                                              CTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAt                              >  2:1700567‑M1/1‑91 (MQ=255)

                                                              CTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAt                              <  2:2986047‑M1/91‑1 (MQ=255)

                                                              CTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAt                              >  1:669688‑M1/1‑91 (MQ=255)

                                                               ttCACCCAAATAATGGTGCGGGGATTTTTTCCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAat                              <  2:514393/91‑1 (MQ=255)

                                                                  aCCCAAATAATGGTGCGGGGATTTTTT‑CTTCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATaa                          >  2:3413641/1‑91 (MQ=255)

                                                                  aCCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATaa                          <  2:2360048/91‑1 (MQ=255)

                                                                  aCCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATaa                          <  1:2377275/91‑1 (MQ=255)

                                                                   cccAAATAATGGTGCGGGGATTTTTT‑CATCCATATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAAc                         >  2:3890475/1‑91 (MQ=255)

                                                                   cccAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAAc                         <  2:1628018/91‑1 (MQ=255)

                                                                       aataatGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAAt                     >  1:36661/1‑91 (MQ=255)

                                                                        ataatGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATc                    <  1:3333353/91‑1 (MQ=255)

                                                                         taatGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATcc                   <  1:336449/91‑1 (MQ=255)

                                                                          aatGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATccc                  >  1:60610/1‑91 (MQ=255)

                                                                          aatGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATccc                  <  2:1017242/91‑1 (MQ=255)

                                                                           atGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcct                 <  2:374083/91‑1 (MQ=255)

                                                                             ggTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGTATATAACAAATCactcc               >  2:1014827/1‑91 (MQ=255)

                                                                              gTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct              <  1:3912423/91‑1 (MQ=255)

                                                                              gTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct              >  2:3619901/1‑91 (MQ=255)

                                                                              gTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct              >  1:2893191/1‑91 (MQ=255)

                                                                              gTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCcctcct              >  2:1667728/1‑91 (MQ=255)

                                                                               tGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCctcctc             >  2:1139641/1‑91 (MQ=255)

                                                                                gCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCctct            <  2:1537672/91‑1 (MQ=255)

                                                                                gCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCctct            <  2:2102540/91‑1 (MQ=255)

                                                                                gCGGGGATTTTTT‑CATCCAAATTGTGGAAATTCCACATTTTACATATCGTAATCTTTTAGGAAACTAGTGAATATAACAAATCCCCCctct            <  2:630428/91‑1 (MQ=255)

                                                                                 cGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCtctc           <  2:465485/91‑1 (MQ=255)

                                                                                   gggatttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGCATATAACAAATCCCTCCTCTCAt         >  2:1577526‑M2/8‑91 (MQ=255)

                                                                                   gggatttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAt         <  2:3767946‑M2/84‑1 (MQ=255)

                                                                                    ggatttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAtt        <  2:3110968‑M2/85‑1 (MQ=255)

                                                                                    ggatttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAtt        <  2:600367‑M2/85‑1 (MQ=255)

                                                                                     gatttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAttt       <  2:1332199‑M2/86‑1 (MQ=255)

                                                                                      atttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAtttt      <  1:815869‑M2/87‑1 (MQ=255)

                                                                                      atttTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCAtttt      <  1:1865051‑M2/87‑1 (MQ=255)

                                                                                         tTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTaa   <  1:3015156‑M2/90‑1 (MQ=255)

                                                                                         tTTT‑CATCCAAATTTTGGAAATGCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTaa   <  2:3184448‑M2/90‑1 (MQ=255)

                                                                                          ttt‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTaaa  >  1:63505/1‑91 (MQ=255)

TAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTT‑CATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAATATAACAAATCCCTCCTCTCATTTTTAAA  >  USA300TCH1516_ALE/2651063‑2651243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.