New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2661803156 (0.770)12 (0.070) 7/128 NT 8.2% intergenic (‑196/‑125) ybiV/yydI Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI
?USA300TCH1516_ALE = 2661815 146 (0.900)intergenic (‑208/‑113) ybiV/yydI Sugar phosphatase YbiV/putative peptide export ATP‑binding protein YydI

Only 100 of 116 total aligned reads displayed.

TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2661698‑2661803
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatcacactatatttTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG  <  USA300TCH1516_ALE/2661815‑2661726
                                                                                                                                                                                                     
TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAA                                                                                                            >  2:1817866/1‑91
 CACATTTTGAAATTGCTTTCATAGAGGCAAAACACAATACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAAT                                                                                                           <  2:299525/91‑1
    ATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATC                                                                                                        <  1:3493278/91‑1
    ATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATC                                                                                                        <  2:3103660/91‑1
      TTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCAC                                                                                                      <  1:2911214/91‑1
      TTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCAC                                                                                                      <  1:1384132/91‑1
      TTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCAC                                                                                                      <  1:3567995/91‑1
      TTTCAAATTACTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCAC                                                                                                      <  1:3553939/91‑1
       TTGAAATTGCCTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACA                                                                                                     >  2:3497521/1‑91
        TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC                                                                                                    >  1:443870/1‑91
        TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC                                                                                                    >  1:511255/1‑91
        TGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC                                                                                                    >  1:2706854/1‑91
        TGAAATTGCTTTCATATAGGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACAC                                                                                                    <  2:1158513/91‑1
         GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT                                                                                                   >  2:2301146/1‑91
         GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT                                                                                                   >  2:3730418/1‑91
         GAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACT                                                                                                   >  1:2629309/1‑91
          AAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTA                                                                                                  >  1:1277706/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAACTTTCAGAATATTGTAACAATATCACACTAT                                                                                                 >  1:2801164/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACCCTAT                                                                                                 >  2:3007416/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT                                                                                                 >  1:504550/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT                                                                                                 >  2:813063/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT                                                                                                 >  1:65467/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT                                                                                                 >  1:759933/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT                                                                                                 >  1:2550046/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT                                                                                                 >  2:3534724/1‑91
           AATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTAT                                                                                                 >  1:2016493/1‑91
            ATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATA                                                                                                <  1:1734200/91‑1
            ATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATA                                                                                                <  2:3521216/91‑1
            ATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATA                                                                                                <  1:3738430/91‑1
             TTGCTTTCATATGTGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAT                                                                                               <  2:357325/91‑1
             TTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAT                                                                                               >  2:2425707/1‑91
             TTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAT                                                                                               <  2:3562960/91‑1
             TTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAT                                                                                               >  2:2425632/1‑91
             TTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATAT                                                                                               <  1:3285993/91‑1
              TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT                                                                                              <  2:3321530/91‑1
              TGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATT                                                                                              <  2:513863/91‑1
              TGCTTTCATATATGCAAAACACATTACACTGCATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATAGCACACTATATT                                                                                              >  2:3018635/1‑91
               GCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT                                                                                             <  1:84784/91‑1
               GCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT                                                                                             <  1:101663/91‑1
                            CAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATTTTGTAAAAATATCACACTATATTTTGTCTAAATGATA                                                                                <  1:3340168/91‑1
                              AAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAA                                                                              <  1:3551809/91‑1
                               AACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAAT                                                                             <  2:1616847/91‑1
                               AACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAAT                                                                             <  2:1120689/91‑1
                               AACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAAT                                                                             <  1:954051/91‑1
                                     TTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTG                                                                       <  1:1599249/91‑1
                                       ACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                     <  1:2360779/91‑1
                                       ACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                     <  2:1895403/91‑1
                                       ACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                     <  2:1219655/91‑1
                                       ACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTG                                                                     <  1:1202323/91‑1
                                        CACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGA                                                                    <  2:3946138/91‑1
                                            GGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATT                                                               <  1:1652319/91‑1
                                                                                          ATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCA                 <  1:3307933/91‑1
                                                                                          ATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCA                 >  1:1804721/1‑91
                                                                                          ATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCA                 >  2:3074207/1‑91
                                                                                          ATATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCA                 <  1:3083649/91‑1
                                                                                          ATATCACACTATATGTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATGTCCA                 <  2:352004/91‑1
                                                                                           TATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAG                >  2:1112780/1‑91
                                                                                           TATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAG                >  2:1112427/1‑91
                                                                                           TATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAG                >  2:1112323/1‑91
                                                                                           TATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAG                >  2:1112201/1‑91
                                                                                           TATCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAG                >  2:1112121/1‑91
                                                                                             TCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTG              <  2:1845101/91‑1
                                                                                             TCACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATCGTCGCCTCTGAATGCTATATCCAGTG              >  2:509784/1‑91
                                                                                              CACCCTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGT             <  2:292468/91‑1
                                                                                              CACACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGT             <  1:982916/91‑1
                                                                                                CACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           <  1:386224/91‑1
                                                                                                CACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           <  1:1806152/91‑1
                                                                                                CACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           >  2:158846/1‑91
                                                                                                CACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           <  1:647063/91‑1
                                                                                                CACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           >  2:1108348/1‑91
                                                                                                CACTATATTTTGTCTAAATAATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           <  2:3322030/91‑1
                                                                                                 aaTATAGTTTGTCTAAAGGATAAATATAGTGCGATACTGTTACAATATTCTGAAATTTATGGTAGCCTCTGAATGCTATATCCAGTGTAAT          <  2:796421/89‑1
                                                                                                 ACTATATTTTGTCTAAATGGTAATTATAGTGTGATATTTTTACAATATTCTGAAATGTATGTTCGCCTCTGAATGCTATATCCAGTGTAAT          <  2:797005/91‑1
                                                                                                 ACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTTACTTTATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           >  2:469320/1‑91
                                                                                                 ACTATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAA           >  2:471894/1‑91
                                                                                                 ACTATATTTTGTATAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAAT          <  2:796731/91‑1
                                                                                                  CTATATTTTGTCTATATGATAAATATAGTGTGATATTTTTACAATATTCTGAGATTTATGTTCGCCTCTGGATGCGATATCCAGTGTAATG         <  2:2343539/91‑1
                                                                                                   TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGT        <  1:1108062/91‑1
                                                                                                   TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGT        <  1:380721/91‑1
                                                                                                   TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGT        <  2:2596023/91‑1
                                                                                                   TATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTAAAATATTCTAAAATTTATGTTCGCATCTAAATGCTATATCAAGTGTAATGT        >  2:649641/1‑91
                                                                                                    ATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTG       >  2:566458/1‑91
                                                                                                    ATATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTG       >  1:1148664/1‑91
                                                                                                    ATATTTTGTCTAAATGATAAATATAGTGTGAGATTTTTACAATATTCTGAAATTTATGTTCGCCTCTAAATGCTATATCGAGTGTAATGTG       >  2:3017799/1‑91
                                                                                                     TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT      >  2:2264164/1‑91
                                                                                                     TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT      >  2:2519004/1‑91
                                                                                                     TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGT      <  2:2316347/91‑1
                                                                                                     TATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCAGAATGCTATATCCAGTGTAATGTGT      >  1:3679924/1‑91
                                                                                                      ATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGATATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTT     >  1:1216489/1‑91
                                                                                                      ATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTT     <  1:1842158/91‑1
                                                                                                      ATTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTT     <  2:2512727/91‑1
                                                                                                       TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT    <  2:3310931/91‑1
                                                                                                       TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT    >  1:551694/1‑91
                                                                                                       TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT    >  1:2078013/1‑91
                                                                                                       TTTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTT    <  2:3310863/91‑1
                                                                                                        TTTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTT   <  2:281336/91‑1
                                                                                                         TTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG  >  2:2409395/1‑91
                                                                                                         TTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG  >  1:328541/1‑91
                                                                                                         TTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG  >  2:3259169/1‑91
                                                                                                         TTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG  <  2:1139454/91‑1
                                                                                                                                                                                                     
TCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2661698‑2661803
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatcacactatatttTGTCTAAATGATAAATATAGTGTGATATTTTTACAATATTCTGAAATTTATGTTCGCCTCTGAATGCTATATCCAGTGTAATGTGTTTTG  <  USA300TCH1516_ALE/2661815‑2661726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.