| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2674533 = | 142 (0.700) | 7 (0.040) | 5/140 | NT | 5.8% | intergenic (‑45/+256) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | 2674588 = | 105 (0.590) | intergenic (‑100/+201) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
GTATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2674632‑2674533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > USA300TCH1516_ALE/2674588‑2674677 GTATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTT > 1:2638872/1‑91 ATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCA < 1:793964/91‑1 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT < 1:1502369/91‑1 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 2:2588766/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 2:1684388/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT > 2:2588957/1‑91 TAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCAT < 2:310656/91‑1 AATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATG > 1:2289166/1‑91 AATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATG < 2:1874010/91‑1 AATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATG > 1:2288998/1‑91 ATAGCTATGAATTAGGTATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 2:460887/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 2:2204515/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 1:1880248/91‑1 ATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 1:2381794/91‑1 gAGCTGTGAGTTAGATATCACTTGCGTGTTACTGGTTATGCTGGCATGTGCATACAACCGCACTATGAGAATAGTCTTGTTTGGTCATGCC < 2:2914550/90‑1 TAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 2:2589112/91‑1 TAGCTATGAATTAGATATCACGTGCGTGTTACTGGTAATGCAGGCATGAGCACACAACCGCACTATGAGAACAGTCTTGTTTGTTCATGCC < 2:2589125/91‑1 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGATCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 2:1755498/91‑1 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 2:3312122/91‑1 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 1:1640555/91‑1 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 1:1765748/91‑1 CTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 1:731902/91‑1 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 2:2626905/1‑91 CAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACAT > 2:2627366/1‑91 AACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAAGTCATAGCTATTATACATAT > 2:3251637/1‑91 CAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTT > 2:1628271/1‑91 CAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTT > 2:1658046/1‑91 ACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGT > 1:722562/1‑91 CTATGAGAATAGTCTTGTTTGTTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATATGTAATAGC > 1:3552079/1‑91 TTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACA > 1:3286936/1‑91 TCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAA > 1:3041319/1‑91 TCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAA > 1:2630474/1‑91 CATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAT < 2:2845997/91‑1 ATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATT < 2:1330072/91‑1 TGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTT > 1:3248267/1‑91 GCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATATCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTT > 1:3431030/1‑91 GCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTT < 1:71279/91‑1 GCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTT > 1:359050/1‑91 CCTGCGTTACCAGTAACACGCAAGTCATATCTAATTCATAGCTATTATACATAGTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 1:3682242/91‑1 CCTGCATTAGCAGTAACACGCAAGTGAGATCTAATTCATGGCTATTATACATTTGTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 2:598075/91‑1 CCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA > 1:3290573/1‑91 CCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 2:3396116/91‑1 CCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTA < 1:3899126/91‑1 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTCTTATACATATTTGTAAAAGCGTTTTACACAACTTTTTCACAATTTTATC > 2:3010804/1‑91 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATC > 2:2576286/1‑91 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATC > 1:3279151/1‑91 TGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATC > 1:2461577/1‑91 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCTCATTTTTATCA > 2:3402478/1‑91 GCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCA > 1:1501039/1‑91 CATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > 2:2741/1‑91 CATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > 1:2564682/1‑91 CATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT < 2:464092/91‑1 CATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > 2:2527559/1‑91 GTATAATAGCTATGAATTAGATATCACTTGCGTGTTACTGGTAATGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2674632‑2674533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCAT > USA300TCH1516_ALE/2674588‑2674677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |