| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2674533 = | 142 (0.700) | 7 (0.040) | 5/140 | NT | 5.8% | intergenic (‑45/+256) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | 2674588 = | 105 (0.590) | intergenic (‑100/+201) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
Only 100 of 179 total aligned reads displayed.
CCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCATC > USA300TCH1516_ALE/2674498‑2674678 | cTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGAATATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCAtt < 1:3352975/91‑1 (MQ=255) tATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTa > 2:1922982/1‑91 (MQ=255) tATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTa > 2:2741754/1‑91 (MQ=255) tATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTa > 1:1718056/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 1:215827/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 2:1002824/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc < 1:861756/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCTGTTGTTTGCTCATGCCTGCATTAcc > 1:3679157/1‑91 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 1:2007098/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 1:1922675/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc > 1:655926/1‑91 (MQ=255) tcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAg > 1:3536717/1‑91 (MQ=255) cAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGt < 2:2883586/91‑1 (MQ=255) cAATTTCCGCTTACATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGt < 2:713157/91‑1 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTa > 1:2439343/1‑91 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTa > 2:2638006/1‑91 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCCGCATTACCAGTa > 2:3269570/1‑91 (MQ=255) aTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTaa > 1:1693038/1‑91 (MQ=255) tttCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAac > 2:627635/1‑91 (MQ=255) ttCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAaca < 2:3710351/91‑1 (MQ=255) tCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAacac < 1:1744573/91‑1 (MQ=255) tCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAacac < 1:3692882/91‑1 (MQ=255) cGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGc > 1:2765578/1‑91 (MQ=255) gCTTCCATGTACAAGAGAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa < 2:268466/91‑1 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 2:2409700/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 1:2053082/1‑91 (MQ=255) cATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGa < 2:422630/91‑1 (MQ=255) cATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGa < 2:1969060/91‑1 (MQ=255) cATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGa < 1:1324639/91‑1 (MQ=255) gTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGatat < 2:1593756/91‑1 (MQ=255) tACAAGAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATc < 2:3210181/91‑1 (MQ=255) tACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATc < 1:1900299/91‑1 (MQ=255) cAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTa < 1:2833969/91‑1 (MQ=255) aaaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCGCATGCCTGCATTACCAGTAACACGCAAGTGATATCTaa < 1:1608988/91‑1 (MQ=255) aaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAAt < 2:728008/91‑1 (MQ=255) aaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTc < 2:1481751/91‑1 (MQ=255) aaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCa < 2:1520507/91‑1 (MQ=255) aaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCa > 1:1540463/1‑91 (MQ=255) aaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCa > 1:1777647/1‑91 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg < 2:3312122‑M1/91‑1 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg < 1:731902‑M1/91‑1 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGATCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg < 2:1755498‑M1/91‑1 (MQ=255) GGCATGACCAAACAAGACTATTCTCATAGTGCGGTTGTATGCACATGCCAGCATAACCAGTAACACGCAAGTGATATCTAACTCACAGctc < 2:2914550‑M1/91‑2 (MQ=255) GGCATGAACAAACAAGACTGTTCTCATAGTGCGGTTGTGTGCTCATGCCTGCATTACCAGTAACACGCACGTGATATCTAATTCATAGCta < 2:2589125‑M1/91‑1 (MQ=255) CATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatt < 2:1874010‑M1/91‑1 (MQ=255) CATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatt > 1:2289166‑M1/1‑91 (MQ=255) CATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatt > 1:2288998‑M1/1‑91 (MQ=255) ATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatta < 1:1502369‑M1/91‑1 (MQ=255) ATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatta > 2:2588957‑M1/1‑91 (MQ=255) TGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtattat < 1:793964‑M1/91‑1 (MQ=255) AACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATAc > 1:2638872‑M1/1‑91 (MQ=255) acaaacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACa > 1:3854388/1‑91 (MQ=255) caaacaaccgcactatgagaatagtcttgtttgttcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACat > 2:2626905‑M2/45‑91 (MQ=255) caacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACata < 2:3934265/90‑1 (MQ=255) aaacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACata < 2:2284513/91‑1 (MQ=255) aaacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACata < 1:1483504/91‑1 (MQ=255) aacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACatat > 1:1645170/1‑91 (MQ=255) aacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACatat > 1:1645260/1‑91 (MQ=255) caaccgcactatgagaatagtcttgtttgttcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATAttt > 2:1658046‑M2/41‑91 (MQ=255) caaccgcactatgagaatagtcttgtttgttcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATAttt > 2:1628271‑M2/41‑91 (MQ=255) aaGACTATTCTCATAGCGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTg < 2:3775870/91‑1 (MQ=255) accgcactatgagaatagtcttgtttgttcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGt > 1:722562‑M2/39‑91 (MQ=255) aGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGt < 2:809203/91‑1 (MQ=255) gACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTa > 1:1779832/1‑91 (MQ=255) aCTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTaa > 1:1078135/1‑91 (MQ=255) cTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTaaa > 1:1271865/1‑91 (MQ=255) tATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTaaaa > 1:2374378/1‑91 (MQ=255) ttCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGc > 1:3352671/1‑91 (MQ=255) ctatgagaatagtcttgtttgttcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATATGTAATAGc > 1:3552079‑M2/33‑91 (MQ=255) ctcATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGCTATCTAATTCATAGCTATTATACATATTTGTAAAAGCGt > 2:3162413/1‑91 (MQ=255) ttAGTGCGGTTGTTTGCTCATGCCTGCATAACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGtttt < 2:3922175/90‑1 (MQ=255) tGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTcaac < 1:1002824/91‑1 (MQ=255) tGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTcaac > 1:2575738/1‑91 (MQ=255) gCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTcaaca < 1:2202902/91‑1 (MQ=255) gttgttTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACt < 2:3406684/91‑1 (MQ=255) ttgttTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACtt > 1:1256594/1‑91 (MQ=255) tgttTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACttt > 2:2511052/1‑91 (MQ=255) ttGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTc < 1:1820269/91‑1 (MQ=255) ttGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAACTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTc > 2:1168238/1‑91 (MQ=255) tGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTca > 1:592398/1‑91 (MQ=255) gCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTcac > 1:2916745/1‑91 (MQ=255) gCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTcac < 2:1061769/91‑1 (MQ=255) gCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTcac > 1:3148178/1‑91 (MQ=255) gCTCATGCCTGCATTACCAGTAACACGCAAGTGAAATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTcac < 2:1407609/91‑1 (MQ=255) ttcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTcaca > 1:3286936‑M2/12‑91 (MQ=255) tcatgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACaa > 1:3041319‑M2/11‑91 (MQ=255) catgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAt < 2:2845997‑M2/82‑1 (MQ=255) atgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAtt < 2:1330072‑M2/83‑1 (MQ=255) tgcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAttt > 1:3248267‑M2/8‑91 (MQ=255) gcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATATCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAtttt > 1:3431030‑M2/7‑91 (MQ=255) gcctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAAtttt > 1:359050‑M2/7‑91 (MQ=255) cctgcATTAGCAGTAACACGCAAGTGAGATCTAATTCATGGCTATTATACATTTGTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTa < 2:598075‑M2/86‑1 (MQ=255) cctgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTa < 2:3396116‑M2/86‑1 (MQ=255) tgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTCTTATACATATTTGTAAAAGCGTTTTACACAACTTTTTCACAATTTTatc > 2:3010804‑M2/4‑91 (MQ=255) tgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTatc > 1:2461577‑M2/4‑91 (MQ=255) tgcATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTatc > 2:2576286‑M2/4‑91 (MQ=255) cATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTatcat > 2:2527559‑M2/2‑91 (MQ=255) cATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTatcat < 2:464092‑M2/90‑1 (MQ=255) cATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTatcat > 1:2564682‑M2/2‑91 (MQ=255) aTTACCAGTAACACGCAAGTGATATGTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTatcatc < 1:3929669/91‑1 (MQ=255) | CCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCACAATTTTATCATC > USA300TCH1516_ALE/2674498‑2674678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |