| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2674542 | 140 (0.690) | 11 (0.060) | 7/140 | NT | 8.8% | intergenic (‑54/+247) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | = 2674577 | 105 (0.590) | intergenic (‑89/+212) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2674443‑2674542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatgaGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATA < USA300TCH1516_ALE/2674577‑2674488 ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAG > 2:1627645/1‑91ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAG < 2:29833/91‑1 TGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGC < 1:125575/91‑1 TTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAGGCAGG > 2:1293445/1‑91 TTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAACTTCCGCTTCCATGTACAAAAAAGGCAcg > 2:1293446/1‑89 TTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGC > 1:1330072/1‑91 TTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGC > 2:2914914/1‑91 TTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGC > 2:2915641/1‑91 TACCGATACGATGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCA < 1:837423/91‑1 tCCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCAT > 2:1780315/2‑91 tCCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCAT > 2:1780614/2‑91 ACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCAT > 1:464092/1‑91 ACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCAT > 1:2735763/1‑91 CCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATG < 1:395244/91‑1 CGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA > 2:279409/1‑91 CGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA > 1:1268748/1‑91 AACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTT < 1:256755/91‑1 AACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTT < 1:3294609/91‑1 AACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTT < 1:3526605/91‑1 ACATATAAACAACCCCTATCTCAATTTCCGCTTACATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTT < 2:1085788/91‑1 CATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTG < 1:809565/91‑1 ATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCAGGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGT < 1:3340744/91‑1 ATATAAACATCCCCTATCTCAATTTCCGCGTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGT < 2:3417386/91‑1 ATAAACATCCCGTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTC < 1:3582070/91‑1 ACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGC < 1:1996698/91‑1 CATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 2:1342286/91‑1 CATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCC < 2:1342251/91‑1 GCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGG < 1:3734946/91‑1 GCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGG < 1:3735892/91‑1 GCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGG < 2:3858571/91‑1 GCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGG > 1:664680/1‑91 GCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGG < 1:3179444/91‑1 CAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGA < 1:1068394/91‑1 CAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGA > 2:1780993/1‑91 CAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGA > 2:1780994/1‑91 CAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGA > 1:636158/1‑91 AGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTCCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGAT > 2:3058286/1‑91 AGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTCCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGAT > 2:3057806/1‑91 GGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATG > 1:1186328/1‑91 GGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATG < 1:2957948/91‑1 GGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATG > 1:1644604/1‑91 GGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATG < 1:1336191/91‑1 GGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATG > 1:1186417/1‑91 GCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGT > 1:3003381/1‑91 GCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGT > 1:3003281/1‑91 ATGAGCAAACAACCGCGCTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTT < 1:2656837/91‑1 ATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTT > 1:3658497/1‑91 TGAGCAAACAACCGCACTATGAGACTAGTCTTGTTTGTTCATGCCTGCTTTTTTCGAACATGGACGCGGAAATTGCGACAGGGGATGTTTA > 2:568031/1‑91 TGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTA > 1:1287909/1‑91 TGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTA > 2:3613850/1‑91 GAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTAT < 2:681310/91‑1 GAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTAT < 2:1662480/91‑1 GAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTAT < 2:3925150/91‑1 GAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTAT < 2:3924843/91‑1 GAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTAT < 2:3352024/91‑1 AGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATA < 1:132506/91‑1 ATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2674443‑2674542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatgaGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATA < USA300TCH1516_ALE/2674577‑2674488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |