| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2674542 | 140 (0.690) | 11 (0.060) | 7/140 | NT | 8.8% | intergenic (‑54/+247) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | = 2674577 | 105 (0.590) | intergenic (‑89/+212) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
Only 100 of 257 total aligned reads displayed.
CGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATAC > USA300TCH1516_ALE/2674452‑2674632 | ttgtgaaaaagttgttgaaaacgcttttacaaatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGa > 1:3041319‑M1/82‑91 (MQ=255)cGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA > 1:1268748‑M1/1‑91 (MQ=255) aTACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaac < 2:3268839/91‑1 (MQ=255) tACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaaca > 2:2565489/1‑91 (MQ=255) tACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaaca > 1:48357/1‑91 (MQ=255) aCGTTGCAATTGTCCAAACAATTTCTAAAACATATAAACATCCCCTATCTCAATGTCCGCTTCCATGTACAAAAAAAGCAGGCATGaacaa < 2:1166943/91‑1 (MQ=255) cGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAGGCAGGCATGaacaaa < 2:1131537/91‑1 (MQ=255) cGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAGGCAGGCATGaacaaa < 2:2874530/91‑1 (MQ=255) gTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGaacaaac < 1:2845283/91‑1 (MQ=255) gCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAg < 1:1014746/91‑1 (MQ=255) gCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAg > 2:1430825/1‑91 (MQ=255) gCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAg > 2:2001568/1‑91 (MQ=255) gCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAg > 2:3759647/1‑91 (MQ=255) gCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAg < 1:2967137/91‑1 (MQ=255) cAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGa > 2:1325945/1‑91 (MQ=255) aaTTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGAc < 2:1497811/91‑1 (MQ=255) aTTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACt < 1:2193722/91‑1 (MQ=255) ccAAACAATTTCTTAAACATATAAACATCCCCTATCTAAATTTCCGCTTCCTTGTACAAAAAAAGAAGGCATGAACAAACAAGACGATtct > 1:3676510/1‑91 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCAt > 2:1200068/1‑91 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCAt > 1:1435985/1‑91 (MQ=255) aaCAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCACCCATGAACAACCAAGACTATTCTCAt > 2:3422476/1‑91 (MQ=255) aCAGTTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATa < 1:3055241/91‑1 (MQ=255) gctattacatatatgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAg > 1:3552079‑M1/60‑91 (MQ=255) cAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAg < 1:3554296/91‑1 (MQ=255) cAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAg > 2:2833969/1‑91 (MQ=255) aTTTGTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTg < 1:3289677/91‑1 (MQ=255) aTTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCAATGAACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTg < 2:3237794/91‑1 (MQ=255) tttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGc > 1:2357603/1‑91 (MQ=255) ttCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCg < 1:3306369/91‑1 (MQ=255) tCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCgg > 1:3582501/1‑91 (MQ=255) tCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCgg > 2:3658239/1‑91 (MQ=255) cTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgt < 2:3164272/91‑1 (MQ=255) tAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttg < 1:2142282/91‑1 (MQ=255) tAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttg > 1:783283/1‑91 (MQ=255) tAAACATATAAACATCCCCTATCTCAATTTCCGCTACCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttg < 2:5831/91‑1 (MQ=255) aaaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgt < 2:230997/91‑1 (MQ=255) aaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAgcaaacaaccgcactatgagaatagtcttgtt < 1:3526605‑M1/91‑33 (MQ=255) aaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt < 2:2966018/91‑1 (MQ=255) aaCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGgttgtt < 1:2196570/91‑1 (MQ=255) aCATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGttt > 1:2536664/1‑91 (MQ=255) atgtataatagctatgaattagatatcacttgcgtgttactggtaatGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTg > 2:2626905‑M1/48‑91 (MQ=255) atatAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc < 1:2861207/91‑1 (MQ=255) atatAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc < 1:3397076/91‑1 (MQ=255) atatAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCAGGAgcaaacaaccgcactatgagaatagtcttgtttgt < 1:3340744‑M1/91‑36 (MQ=255) ataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtc < 2:3924843‑M2/91‑3 (MQ=255) taAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtca > 1:1287909‑M2/1‑88 (MQ=255) aaaCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGCGCGGTTGTTTGCtcat < 1:2656837‑M2/91‑5 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgc < 1:1996698‑M1/91‑42 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgc > 1:3003281‑M2/1‑85 (MQ=255) cATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcc < 2:1342286‑M1/91‑43 (MQ=255) cATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcc > 1:1644604‑M2/1‑84 (MQ=255) tCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctg > 2:1780994‑M2/1‑82 (MQ=255) tCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctg > 2:1780993‑M2/1‑82 (MQ=255) ccccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgc < 1:3179444‑M2/91‑11 (MQ=255) ccccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgc > 1:664680‑M2/1‑81 (MQ=255) tATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTa > 2:2741754/1‑91 (MQ=255) tATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTa > 2:1922982/1‑91 (MQ=255) tATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTa > 1:1718056/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 2:1002824/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc < 1:861756/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 2:3529096/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc > 1:655926/1‑91 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTa > 1:2439343/1‑91 (MQ=255) ttCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAaca < 1:2912591/91‑1 (MQ=255) tCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAacac < 1:3692882/91‑1 (MQ=255) gCTTCCATGTACAAGAGAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa < 2:268466/91‑1 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 1:2053082/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa < 1:2531599/91‑1 (MQ=255) gTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGatat < 2:3951473/91‑1 (MQ=255) tACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATc > 2:2298734/1‑91 (MQ=255) tACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATc < 2:690441/91‑1 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt > 2:3729338/1‑91 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt > 2:1429661/1‑91 (MQ=255) gaaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTaa < 2:164795/90‑1 (MQ=255) aaaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCGCATGCCTGCATTACCAGTAACACGCAAGTGATATCTaa < 1:1608988/91‑1 (MQ=255) aaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAAt < 2:728008/91‑1 (MQ=255) aaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAAt > 1:3208236/1‑91 (MQ=255) aaaGCAGGCATGAACAAACACGCCTATTCTCCTAGTGCGGTTGTTTGCGCATGCCTGCAGTACCAGTAACGCGCAGGTGATATCTAATTCa < 2:1520530/91‑1 (MQ=255) aaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCa > 1:1777647/1‑91 (MQ=255) gCAGGCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagatagggg < 2:3858571‑M1/91‑82 (MQ=255) gCAGGCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagatagggg < 1:3735892‑M1/91‑82 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGATCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg < 2:1755498‑M1/91‑1 (MQ=255) cAGGCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagatagggga < 1:1068394‑M1/91‑83 (MQ=255) aGGCATGAgcaaacaaccgcactatgagaatagtcttgtttgtccatgcctgctttttttgtacatggaagcggaaattgagataggggat > 2:3058286‑M1/1‑8 (MQ=255) aGGCATGAgcaaacaaccgcactatgagaatagtcttgtttgtccatgcctgctttttttgtacatggaagcggaaattgagataggggat > 2:3057806‑M1/1‑8 (MQ=255) ggCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagataggggatg > 1:1186328‑M1/1‑7 (MQ=255) ggCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagataggggatg > 1:1186417‑M1/1‑7 (MQ=255) ggCATGAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagataggggatg < 1:1336191‑M1/91‑85 (MQ=255) GGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCta < 2:2589112‑M1/91‑1 (MQ=255) GCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtat < 1:1880248‑M1/91‑1 (MQ=255) GCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATACCTAATTCATAGCtat < 2:460887‑M1/91‑1 (MQ=255) CATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatt > 1:2289166‑M1/1‑91 (MQ=255) ATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatta < 1:1502369‑M1/91‑1 (MQ=255) ATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatta < 2:310656‑M1/91‑1 (MQ=255) tGAgcaaacaaccgcactatgagactagtcttgtttgttcatgcctgcttttttcgaacatggacgcggaaattgcgacaggggatgttta > 2:568031‑M1/1‑3 (MQ=255) gAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagataggggatgtttat < 2:1662480‑M1/91‑90 (MQ=255) gAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagataggggatgtttat < 2:681310‑M1/91‑90 (MQ=255) gAgcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagataggggatgtttat < 2:3352024‑M1/91‑90 (MQ=255) agcaaacaaccgcactatgagaatagtcttgtttgttcatgcctgctttttttgtacatggaagcggaaattgagataggggatgtttata < 1:132506‑M1/91‑91 (MQ=255) AACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATAc > 1:2638872‑M1/1‑91 (MQ=255) | CGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATAC > USA300TCH1516_ALE/2674452‑2674632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |