| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2674542 | 140 (0.690) | 11 (0.060) | 7/140 | NT | 8.8% | intergenic (‑54/+247) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | = 2674577 | 105 (0.590) | intergenic (‑89/+212) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
Only 100 of 192 total aligned reads displayed.
ATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCAC > USA300TCH1516_ALE/2674487‑2674666 | atatAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc < 1:2861207/91‑1 (MQ=255)atatAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc < 2:1803090/91‑1 (MQ=255)atatAAACATCCCCTATCGCAATTTCCGCTTCCATGTACAAAAACAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGc < 1:3137853/91‑1 (MQ=255) ataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtc < 2:681310‑M2/91‑3 (MQ=255) ataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtc < 2:1662480‑M2/91‑3 (MQ=255) ataAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtc < 2:3925150‑M2/91‑3 (MQ=255) taAACATCCCCTGTCGCAATTTCCGCGTCCATGTTCGAAAAAAGCAGGCATGAACAAACAAGACTAGTCTCATAGTGCGGTTGTTTGCtca > 2:568031‑M2/1‑88 (MQ=255) taAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtca > 1:1287909‑M2/1‑88 (MQ=255) taAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtca > 2:3613850‑M2/1‑88 (MQ=255) aaaCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcat > 1:3658497‑M2/1‑87 (MQ=255) aaaCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGCGCGGTTGTTTGCtcat < 1:2656837‑M2/91‑5 (MQ=255) aCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgc > 1:3003281‑M2/1‑85 (MQ=255) cATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcc < 1:1336191‑M2/91‑8 (MQ=255) cATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcc > 1:1644604‑M2/1‑84 (MQ=255) cATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcc > 1:1186328‑M2/1‑84 (MQ=255) aTCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGGACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcct > 2:3057806‑M2/1‑83 (MQ=255) tCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctg > 2:1780993‑M2/1‑82 (MQ=255) tCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctg > 1:636158‑M2/1‑82 (MQ=255) tCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctg < 1:1068394‑M2/91‑10 (MQ=255) ccccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgc < 1:3179444‑M2/91‑11 (MQ=255) ccccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgc < 1:3735892‑M2/91‑11 (MQ=255) ccccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgc < 2:3858571‑M2/91‑11 (MQ=255) ccccTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgc > 1:664680‑M2/1‑81 (MQ=255) tATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTa > 2:2741754/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc < 1:3361097/91‑1 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 1:215827/1‑91 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc < 1:861756/91‑1 (MQ=255) aTCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAc > 2:1002824/1‑91 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 1:1922675/91‑1 (MQ=255) tctcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTAcc < 2:3529096/91‑1 (MQ=255) tcAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAg > 1:3536717/1‑91 (MQ=255) cAATTTCCGCTTACATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGt < 2:713157/91‑1 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTa > 1:2439343/1‑91 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTa > 2:2638006/1‑91 (MQ=255) aaTTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCCGCATTACCAGTa > 2:3269570/1‑91 (MQ=255) tCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAacac < 1:30520/91‑1 (MQ=255) tCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAacac < 1:3692882/91‑1 (MQ=255) cGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGc > 1:2765578/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa < 1:2531599/91‑1 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 2:2409700/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCa > 1:2053082/1‑91 (MQ=255) gCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTCGCTCATCCCTGCATTACCAGTAACACGCa > 2:3192369/1‑91 (MQ=255) cTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCaa > 2:1182962/1‑91 (MQ=255) cATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGa < 1:1324639/91‑1 (MQ=255) cATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGa < 2:1969060/91‑1 (MQ=255) gTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGatat < 2:1593756/91‑1 (MQ=255) gTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGatat < 2:3951473/91‑1 (MQ=255) tACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATc < 1:1900299/91‑1 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt > 2:3729338/1‑91 (MQ=255) aCAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCt > 2:1429661/1‑91 (MQ=255) cAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTa < 1:2833969/91‑1 (MQ=255) aaaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCGCATGCCTGCATTACCAGTAACACGCAAGTGATATCTaa < 1:1608988/91‑1 (MQ=255) aaaaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAAt < 2:728008/91‑1 (MQ=255) aaaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTc < 2:1482108/91‑1 (MQ=255) aaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCa > 1:1540463/1‑91 (MQ=255) aaaGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCa < 2:1520507/91‑1 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg < 1:1765748‑M1/91‑1 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg < 1:731902‑M1/91‑1 (MQ=255) GCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGATCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAg < 2:1755498‑M1/91‑1 (MQ=255) ggCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgctttttttgtacatggaagcggaaattgagataggggatg < 2:1342286‑M2/91‑50 (MQ=255) GGCATGACCAAACAAGACTATTCTCATAGTGCGGTTGTATGCACATGCCAGCATAACCAGTAACACGCAAGTGATATCTAACTCACAGctc < 2:2914550‑M1/91‑2 (MQ=255) GGCATGAACAAACAAGACTGTTCTCATAGTGCGGTTGTGTGCTCATGCCTGCATTACCAGTAACACGCACGTGATATCTAATTCATAGCta < 2:2589125‑M1/91‑1 (MQ=255) GGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCta < 2:2589112‑M1/91‑1 (MQ=255) GCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATACCTAATTCATAGCtat < 2:460887‑M1/91‑1 (MQ=255) CATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatt > 1:2289166‑M1/1‑91 (MQ=255) CATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatt > 1:2288998‑M1/1‑91 (MQ=255) ATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatta < 2:310656‑M1/91‑1 (MQ=255) ATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatta > 2:2588766‑M1/1‑91 (MQ=255) ATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtatta < 1:1502369‑M1/91‑1 (MQ=255) TGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCtattat < 1:793964‑M1/91‑1 (MQ=255) gAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgctttttttgtacatggaagcggaaattgagatacgggatgtttat < 1:3582070‑M2/91‑55 (MQ=255) acaaacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACa > 1:3854388/1‑91 (MQ=255) aaacaaGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgctttttttgtacatgtaagcggaaattgagataggggttgtttatatgt < 2:1085788‑M2/91‑59 (MQ=255) aaacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACata < 2:2284513/91‑1 (MQ=255) aacaaGACTATTCTCATAGTGCGGTTGTTTGCtcatgcctgctttttttgtacatggaagcggaaattgagataggggatgtttatatgtt < 1:3294609‑M2/91‑60 (MQ=255) aacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACatat < 2:1879164/91‑1 (MQ=255) aacaaGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACatat > 1:1645260/1‑91 (MQ=255) aGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGt < 2:809203/91‑1 (MQ=255) gACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTa > 1:1779832/1‑91 (MQ=255) tATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTaaaa > 1:1729829/1‑91 (MQ=255) tATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTaaaa < 2:3325406/91‑1 (MQ=255) tATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTaaaa > 1:2374378/1‑91 (MQ=255) aTTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAg > 2:2866647/1‑91 (MQ=255) aTTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAg > 1:3463548/1‑91 (MQ=255) ttCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGc > 1:3352671/1‑91 (MQ=255) ctcATAGTGCGGTTTTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGt < 1:1233386/91‑1 (MQ=255) cATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGttt < 1:1661002/91‑1 (MQ=255) ctAGTGCGGTTGTTTGCTCATGCCTGCATAACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGtttt < 2:3922226/90‑1 (MQ=255) aGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTca < 1:638373/91‑1 (MQ=255) aGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTca > 1:1263792/1‑91 (MQ=255) aGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTca > 1:1714542/1‑91 (MQ=255) tGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTcaac < 1:1002824/91‑1 (MQ=255) tGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTcaac > 1:2575738/1‑91 (MQ=255) gCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTcaaca < 1:2202902/91‑1 (MQ=255) gttgttTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACt < 2:3406684/91‑1 (MQ=255) tgttTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACttt > 2:2511052/1‑91 (MQ=255) gttTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACtttt < 1:2001568/91‑1 (MQ=255) ttGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTc < 1:1820269/91‑1 (MQ=255) gCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTcac < 2:1061769/91‑1 (MQ=255) gCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTcac > 1:2916745/1‑91 (MQ=255) | ATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAACAAACAAGACTATTCTCATAGTGCGGTTGTTTGCTCATGCCTGCATTACCAGTAACACGCAAGTGATATCTAATTCATAGCTATTATACATATTTGTAAAAGCGTTTTCAACAACTTTTTCAC > USA300TCH1516_ALE/2674487‑2674666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |