New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2680006213 (1.050)21 (0.130) 8/130 NT 10.3% intergenic (+58/+702) ssaA2_4/USA300HOU_RS13810 Staphylococcal secretory antigen ssaA2/hypothetical protein
?USA300TCH1516_ALE = 2681409 193 (1.170)intergenic (‑444/+135) USA300HOU_RS13810/mvaA hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

GTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2679902‑2680006
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTG  <  USA300TCH1516_ALE/2681409‑2681320
                                                                                                                                                                                                   
GTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTG                                                                                                          >  1:2452801/1‑91
GTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTG                                                                                                          >  1:388516/1‑91
GTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTG                                                                                                          >  2:3563164/1‑91
 TGTGCTAAGCAAAACGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTGTCACGAACGCTTCAATTTCCTGTATGCGTGT                                                                                                         <  1:3563484/91‑1
 TGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGT                                                                                                         >  1:1032426/1‑91
 TGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGT                                                                                                         >  1:2746174/1‑91
 TGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGT                                                                                                         >  1:1599081/1‑91
 TGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGT                                                                                                         <  1:106233/91‑1
  GTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCACTTTCCTGTATGCGTGTG                                                                                                        >  2:1927106/1‑91
  GTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTG                                                                                                        >  2:1925933/1‑91
  GTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTG                                                                                                        >  2:1926342/1‑91
  GTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTG                                                                                                        >  1:1318683/1‑91
   TACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGA                                                                                                       <  1:655609/91‑1
    ACTAATCAAGAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTACCTTTATGCGTGTGAT                                                                                                      <  2:3641998/91‑1
    ACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCGTGTATGCGTGTGAT                                                                                                      <  2:3357108/91‑1
    ACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAT                                                                                                      <  2:1776580/91‑1
    ACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAT                                                                                                      >  1:3844346/1‑91
     CTAAGCAAAGAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATA                                                                                                     <  2:2604100/91‑1
     CTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATA                                                                                                     >  2:3005773/1‑91
      TAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAG                                                                                                    <  1:373558/91‑1
      TAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAG                                                                                                    <  1:2887664/91‑1
      TAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAG                                                                                                    <  1:3294410/91‑1
      TAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAG                                                                                                    >  1:3261705/1‑91
      TAAGCAAAAAGGCAGCACGTAACTTTAACTATATGTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAG                                                                                                    <  1:3294455/91‑1
       AAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGA                                                                                                   >  1:2073101/1‑91
       AAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGA                                                                                                   >  1:2249713/1‑91
       AAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGA                                                                                                   >  1:931010/1‑91
       AAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGA                                                                                                   >  1:3359001/1‑91
       AAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGA                                                                                                   >  1:3359000/1‑91
       AAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGA                                                                                                   >  1:931277/1‑91
       AAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGA                                                                                                   >  2:3450976/1‑91
         GCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAG                                                                                                 <  2:833336/91‑1
         GCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAG                                                                                                 >  2:3463371/1‑91
         GCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAG                                                                                                 >  1:3498232/1‑91
         GCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAG                                                                                                 >  1:907184/1‑91
         GCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAG                                                                                                 >  2:2077735/1‑91
          CAAAAAGGCAGCACGTGACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGT                                                                                                <  2:3784118/91‑1
          CAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGT                                                                                                <  1:3697853/91‑1
           AAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTT                                                                                               >  2:2606440/1‑91
           AAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTT                                                                                               >  2:3144288/1‑91
           AAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTT                                                                                               <  2:2461128/91‑1
           AAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTT                                                                                               >  1:196289/1‑91
           AAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTT                                                                                               <  1:2202357/91‑1
            AAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTT                                                                                              >  1:2707342/1‑91
            AAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTT                                                                                              >  2:701679/1‑91
            AAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTT                                                                                              <  1:2271534/91‑1
             AAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTT                                                                                             <  2:2170652/91‑1
             AAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTT                                                                                             >  2:532370/1‑91
             AAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTT                                                                                             >  2:911860/1‑91
              agGGCAGCTCGTGACTTTAACTTTATGTACTAATCAAAAAACTTCTATCACGATCGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT                                                                                            <  2:1673816/89‑1
              AAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT                                                                                            <  1:3671984/91‑1
              AAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT                                                                                            >  2:2067154/1‑91
              AAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT                                                                                            >  2:885771/1‑91
              AAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT                                                                                            >  2:876375/1‑91
              AAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT                                                                                            >  1:3450942/1‑91
                                                     AACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCT                                                     >  1:2895885/1‑91
                                                          CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATG                                                >  1:2821977/1‑91
                                                          CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATG                                                >  1:1251460/1‑91
                                                          CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATG                                                >  1:1030827/1‑91
                                                           TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCAaga                                               >  1:2946926/1‑88
                                                           TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGA                                               >  1:1628034/1‑91
                                                           TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGA                                               >  1:2446168/1‑91
                                                            ATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAG                                              >  2:417993/1‑91
                                                            ATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAG                                              >  2:88082/1‑91
                                                               ACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACG                                           >  2:2391864/1‑91
                                                               ACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACG                                           >  1:3176932/1‑91
                                                                CGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGA                                          >  2:962199/1‑91
                                                                CGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGA                                          >  2:32136/1‑91
                                                                CGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGA                                          >  2:962179/1‑91
                                                                CGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGA                                          >  2:962383/1‑91
                                                                CGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGA                                          >  1:1596770/1‑91
                                                                CGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGA                                          >  1:1900856/1‑91
                                                                CGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGA                                          >  1:1901316/1‑91
                                                                   ACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTTTTTTTTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATT                                       >  2:1791563/1‑91
                                                                   ACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATT                                       >  1:3537507/1‑91
                                                                                CTGTATGCGTGTGATAGAAGTTTTTTTTTTTTTTTTTCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGTCGAATTCATTATAGGATTC                          >  2:415509/1‑91
                                                                                            GATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACG              >  1:156410/1‑91
                                                                                             ATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGA             >  2:846569/1‑91
                                                                                             ATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGA             >  2:468333/1‑91
                                                                                             ATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGA             >  2:528097/1‑91
                                                                                             ATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGA             >  2:530337/1‑91
                                                                                              TAGAAGTTTTTTGATTAGTAAATCAGTCTAATGTAAAGTAAATAACTTCTTCATGAGACTAATTCATTATAGGATTCAAATTTGGAACGAG            <  1:3511305/91‑1
                                                                                               AGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGT           >  2:739631/1‑91
                                                                                               AGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGT           >  1:583806/1‑91
                                                                                                GAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTT          >  1:831387/1‑91
                                                                                                GAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTT          >  2:3320101/1‑91
                                                                                                GAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTT          >  2:2989185/1‑91
                                                                                                 AAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTT         >  1:1150152/1‑91
                                                                                                 AAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTT         <  1:914150/91‑1
                                                                                                  AGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTC        <  1:1912815/91‑1
                                                                                                  AGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTC        <  1:982212/91‑1
                                                                                                     TTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTA     >  1:3121045/1‑91
                                                                                                      TTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTAT    <  1:3196820/91‑1
                                                                                                      TTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTAT    <  1:942048/91‑1
                                                                                                      TTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTAT    >  2:1624741/1‑91
                                                                                                        TTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTG  >  2:2472506/1‑91
                                                                                                        TTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTG  >  2:2472507/1‑91
                                                                                                                                                                                                   
GTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2679902‑2680006
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTG  <  USA300TCH1516_ALE/2681409‑2681320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.