| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2680006 | 213 (1.050) | 21 (0.130) | 8/130 | NT | 10.3% | intergenic (+58/+702) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2681409 | 193 (1.170) | intergenic (‑444/+135) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
Only 100 of 366 total aligned reads displayed.
AAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC > USA300TCH1516_ALE/2679916‑2680096 | aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTtttta > 1:1089114/1‑91 (MQ=255) aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTtttta > 2:2989639/1‑91 (MQ=255) aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTtttta > 2:2944121/1‑91 (MQ=255) ggCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttat < 1:214554/91‑1 (MQ=255) gcagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatt > 2:3108406/1‑91 (MQ=255) gcagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatt > 1:195787/1‑91 (MQ=255) cagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttattt < 2:1242771/91‑1 (MQ=255) gcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatttta > 2:1624223/1‑91 (MQ=255) gcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTttttatttta > 1:2486836/1‑91 (MQ=255) caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATCGAAGTTtttattttat > 2:3035915/1‑91 (MQ=255) aCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATg > 2:3487554/1‑91 (MQ=255) cGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGa > 1:854082/1‑91 (MQ=255) aaCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAat < 2:2686871/91‑1 (MQ=255) aaCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAat < 1:320810/91‑1 (MQ=255) aCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatt < 1:1772071/91‑1 (MQ=255) aCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatt < 1:3658131/91‑1 (MQ=255) cTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatta > 1:469582/1‑91 (MQ=255) tttAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattat < 1:2435290/91‑1 (MQ=255) ttAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattata > 2:931682/1‑91 (MQ=255) tAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatat < 1:1224984/91‑1 (MQ=255) aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta < 1:1018162/91‑1 (MQ=255) aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatatta < 1:1526832/91‑1 (MQ=255) atatTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATAttatta > 2:1207257/1‑91 (MQ=255) atctACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACt > 1:2950040/4‑91 (MQ=255) tttACTAATCATAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACtt < 1:3588800/91‑1 (MQ=255) aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTa > 1:1263367/1‑91 (MQ=255) aaTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACaa < 1:692131/91‑1 (MQ=255) aTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACaaa > 1:3719639/1‑91 (MQ=255) tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAt > 2:1708099/1‑91 (MQ=255) tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAt < 2:479132/91‑1 (MQ=255) cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAtt > 2:1012479/1‑91 (MQ=255) aaaagCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTc < 2:1558601/91‑1 (MQ=255) aacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGGTTTTATTTTATGAACTTATATTATTACTTCTACAAATTTCaaa < 2:3869673‑M1/54‑1 (MQ=255) acttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAt < 1:1343721‑M1/55‑1 (MQ=255) cTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAtt > 2:3606697/1‑91 (MQ=255) cTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAtt > 2:598099/1‑91 (MQ=255) cTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAAtt < 2:2021880/91‑1 (MQ=255) tctatcacacgcatacaggaaattgaagcgttcGTGATAGTAGTTTTTATTTTATGCAATTATATTATTACTTCTACAAATTTCAAATTGc < 2:3323075‑M1/58‑1 (MQ=255) tctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGc < 1:508688‑M1/58‑1 (MQ=255) cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc < 1:1139764/91‑1 (MQ=255) cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc > 2:1740494/1‑91 (MQ=255) cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc < 1:909957/91‑1 (MQ=255) cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATCTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc < 1:3416619/91‑1 (MQ=255) tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatga > 1:1628034‑M1/1‑46 (MQ=255) tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCg > 1:3789766/1‑91 (MQ=255) tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCg < 2:132690/91‑1 (MQ=255) tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCg > 1:2265407/1‑91 (MQ=255) atcacacgcatacaggaaattgaagcgttcGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCACATTGCCGt < 2:882053‑M1/61‑1 (MQ=255) tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTa > 2:1911862/1‑91 (MQ=255) cacacgcatacaggaaattgaagcgttcGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTaa < 1:395054‑M1/63‑1 (MQ=255) cACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTaa > 2:145078/1‑91 (MQ=255) aCGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacg > 1:3176932‑M1/1‑42 (MQ=255) aCGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAAt < 2:356220/91‑1 (MQ=255) cGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacga > 2:962383‑M1/1‑41 (MQ=255) cGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacga > 2:32136‑M1/1‑41 (MQ=255) cGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacga > 1:1900856‑M1/1‑41 (MQ=255) cGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacga > 1:1596770‑M1/1‑41 (MQ=255) aCGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGaa > 2:276624/1‑91 (MQ=255) cGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAAc < 2:404707/91‑1 (MQ=255) gCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACg > 2:391702/1‑91 (MQ=255) cTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGt < 1:2674908/91‑1 (MQ=255) cTTCAATTTCCTGTATGCGTGTGATAGAAGTTCTTATTTTATGAAATTATATTATTACTTCTACAAATTTTAAATTGCTGTAATTGAACGt > 2:239332/1‑91 (MQ=255) tCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtat > 1:2369099/1‑91 (MQ=255) caggaaattgaagcgttcGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtat < 2:2516997‑M1/73‑1 (MQ=255) cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtata < 2:2657114/91‑1 (MQ=255) aaTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTatat < 2:128137/91‑1 (MQ=255) ccTGTATGCGTGTGCTAGAAGTTTTTATTTTATGAAATTATATTATTATTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttctt > 2:3356972/1‑91 (MQ=255) cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttc > 1:3094236/1‑91 (MQ=255) gTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttctt > 1:3887395/1‑91 (MQ=255) gTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttctt > 2:2184395/1‑91 (MQ=255) gTATGCGTGTGATAGAAATTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTAACGTAATTAAACGTATATttcttctt > 2:1500777/1‑91 (MQ=39) aTGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCa > 1:747773/1‑91 (MQ=255) aTGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCa > 1:945349/1‑91 (MQ=255) tGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCaa < 1:1044082/91‑1 (MQ=255) tGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCaa < 1:2305871/91‑1 (MQ=255) gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAGTTTCAAATTGCCGTAATAGAACGTATATTTCTTCTTCGAc < 2:855615/91‑1 (MQ=39) gCGTGTGATAGAAGTTTTTATTATATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAAc < 2:1120138/91‑1 (MQ=255) tgtgATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtat < 2:67475/91‑1 (MQ=255) tgtgATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtat > 2:420568/1‑91 (MQ=255) GTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtatt > 2:2273188‑M1/1‑91 (MQ=255) GATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtattat < 1:1883366‑M1/91‑1 (MQ=255) aTAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacga > 2:530337‑M1/1‑12 (MQ=255) aTAGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacga > 2:846569‑M1/1‑12 (MQ=255) ATAGAATTTTTTATTTTATGAAATTATATTATTACTTCTTCAAATTTCAAATTGCCGTAATTGAGCGTATATTTCTTCTTCAACTattatt > 2:2559480‑M1/1‑91 (MQ=255) ATACAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCATCAACTattatt > 1:3060479‑M1/1‑91 (MQ=255) tAGAAGTTTTTtgattagtaaatcagtctaatgtaaagtaaataacttcttcatgagactaattcattataggattcaaatttggaacgag < 1:3511305‑M1/91‑81 (MQ=255) TAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTAttt > 1:561763‑M1/1‑91 (MQ=255) aGAAGTTTTTtgattagtaaatcagtctaatgaaaagtaaataacttcttcatgagacgaattcattataggattcaaatttggaacgagt > 2:739631‑M1/1‑10 (MQ=255) GAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCa < 1:2205455‑M1/91‑1 (MQ=255) GAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCa < 2:904233‑M1/91‑1 (MQ=255) GAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCa < 2:3380555‑M1/91‑1 (MQ=255) AAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTcaa < 2:2447608‑M1/91‑2 (MQ=255) GTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCt < 2:2614314‑M1/91‑1 (MQ=255) TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCtt < 2:1369156‑M1/91‑1 (MQ=255) TTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCttt > 1:2642333‑M1/1‑91 (MQ=255) TTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCttt > 1:2867082‑M1/1‑91 (MQ=255) TTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTa < 2:3780732‑M1/91‑1 (MQ=255) TTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTa < 2:2195746‑M1/91‑1 (MQ=255) TTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAg > 1:2780359‑M1/1‑91 (MQ=255) TTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAg > 2:3319273‑M1/1‑91 (MQ=255) | AAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGC > USA300TCH1516_ALE/2679916‑2680096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |