BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2680006	213 (1.050)	21 (0.130)	8/130	NT	10.3%	intergenic (+58/+702)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein
*	?	USA300TCH1516_ALE	= 2681409	193 (1.170)	21 (0.130)	8/130	NT	10.3%	intergenic (‑444/+135)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 271 total aligned reads displayed.

ACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGA  >  USA300TCH1516_ALE/2681319‑2681499

aCAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCa                                                                                            >  2:688843/1‑91 (MQ=255)

 cAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAa                                                                                           >  2:2472506‑M2/1‑90 (MQ=255)

   aTAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaa                                                                                         >  2:1624741‑M2/1‑88 (MQ=255)

       gAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaact                                                                                     <  1:982212‑M2/91‑8 (MQ=255)

       gAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaact                                                                                     <  1:1912815‑M2/91‑8 (MQ=255)

         aaCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttc                                                                                   >  2:2989185‑M2/1‑82 (MQ=255)

         aaCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttc                                                                                   >  1:831387‑M2/1‑82 (MQ=255)

          aCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttct                                                                                  >  2:739631‑M2/1‑81 (MQ=255)

            tCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctat                                                                                >  2:846569‑M2/1‑79 (MQ=255)

            tCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctat                                                                                >  2:530337‑M2/1‑79 (MQ=255)

                 ccAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGa                                                                           >  1:1206993/1‑91 (MQ=255)

                  cAAATTTGAATCATATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGaa                                                                          <  2:3379050/91‑1 (MQ=255)

                   aaaTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAAc                                                                         <  1:467439/91‑1 (MQ=255)

                    aaTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACg                                                                        >  2:2655532/1‑91 (MQ=255)

                     aTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                       <  1:3202024/91‑1 (MQ=255)

                      tttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCt                                                                      <  2:1061231/91‑1 (MQ=255)

                      tttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCt                                                                      >  1:263179/1‑91 (MQ=255)

                      tttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATAAAATAATAAAAAAACTTCTATCACGAACGCt                                                                      <  2:2416450/91‑1 (MQ=39)

                       ttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCtt                                                                     >  1:261119/1‑91 (MQ=255)

                       ttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATGAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCtt                                                                     <  2:3001115/91‑1 (MQ=255)

                        tGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTc                                                                    >  1:78495/1‑91 (MQ=255)

                         gAATCCTATAATGAATTCGTCTCATTAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCa                                                                   <  1:3677479/91‑1 (MQ=255)

                         gAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCa                                                                   <  1:1907364/91‑1 (MQ=255)

                         gAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCa                                                                   <  1:2430673/91‑1 (MQ=255)

                         gAATCCTATAATGAATTCGACTCATGAAGAAGTTATTTACTTTTCATTAGACTGAAAAAAAAAAAAaaaaacttctatcacacgcatacag                                                                   >  2:415509‑M2/1‑66 (MQ=255)

                          aaTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCaa                                                                  >  1:1656337/1‑91 (MQ=255)

                           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                 <  1:572036/91‑1 (MQ=255)

                           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                 <  2:189043/91‑1 (MQ=255)

                           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                 >  1:995917/1‑91 (MQ=255)

                           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                 >  2:1157681/1‑91 (MQ=255)

                           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                 >  1:2240067/1‑91 (MQ=255)

                            tCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAtt                                                                <  2:1460112/91‑1 (MQ=255)

                               tataATGTATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                             <  1:1973464/91‑1 (MQ=255)

                               tataATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                             <  2:2073321/91‑1 (MQ=255)

                               tataATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                             <  1:55131/91‑1 (MQ=255)

                               tataATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                             <  2:1284163/91‑1 (MQ=255)

                                 taATGAACTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTg                                                           <  2:3516266/91‑1 (MQ=255)

                                   aTGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTa                                                         <  1:1465880/91‑1 (MQ=255)

                                   aTGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTa                                                         <  2:2135323/91‑1 (MQ=255)

                                   aTGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTa                                                         <  1:134606/91‑1 (MQ=255)

                                   aTGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTa                                                         <  2:3078394/91‑1 (MQ=255)

                                      aaTTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctatcacacgcatacaggaaattgaagcgt                                                      >  1:3537507‑M2/1‑53 (MQ=255)

                                        ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                    <  1:3936354/91‑1 (MQ=255)

                                        ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                    >  2:3337988/1‑91 (MQ=255)

                                        ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGAGTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                    >  2:3249288/1‑91 (MQ=255)

                                         tCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctatcacacgcatacaggaaattgaagcgttcg                                                   >  2:962199‑M2/1‑50 (MQ=255)

                                          cGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctatcacacgcatacaggaaattgaagcgttcgt                                                  >  1:3176932‑M2/1‑49 (MQ=255)

                                          cGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgtgt                                                  <  1:2291832/91‑1 (MQ=255)

                                          cGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgtgt                                                  >  1:2137657/1‑91 (MQ=255)

                                            tctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                <  1:641019/91‑1 (MQ=255)

                                            tctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                <  1:2657677/91‑1 (MQ=255)

                                            tctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                <  1:1817111/91‑1 (MQ=255)

                                             ctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAt                                               >  1:2973593/1‑91 (MQ=255)

                                              tcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATa                                              <  2:3586065/91‑1 (MQ=255)

                                               cATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctatcacacgcatacaggaaattgaagcgttcgtgatag                                             >  1:1030827‑M2/1‑44 (MQ=255)

                                               cATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctatcacacgcatacaggaaattgaagcgttcgtgatag                                             >  1:2821977‑M2/1‑44 (MQ=255)

                                               cATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctatcacacgcatacaggaaattgaagcgttcgtgatag                                             >  1:1251460‑M2/1‑44 (MQ=255)

                                                   aagaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGt                                         <  1:927540/91‑1 (MQ=255)

                                                   aagaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGt                                         <  2:2056398/91‑1 (MQ=255)

                                                   aagaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGt                                         <  1:1577770/91‑1 (MQ=255)

                                                    agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAaaaaacttctatcacacgcatacaggaaattgaagcgttcgtgatagaagtt                                        >  1:2895885‑M2/1‑39 (MQ=255)

                                                      aagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtttt                                      <  2:2734886/91‑1 (MQ=255)

                                                      aagTTATGTACTTTTCATTAGACTGATTTACTAATCAGTAAACTTCTATCGCGAACGCGTCAGTTTCCTGTATGCGTGTGATAGATGtttt                                      <  2:3757239/91‑1 (MQ=18)

                                                       agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                     >  1:3257551/1‑91 (MQ=255)

                                                       agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                     >  1:1576387/1‑91 (MQ=255)

                                                       agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                     <  2:2540437/91‑1 (MQ=255)

                                                        gTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTa                                    <  2:461147/91‑1 (MQ=255)

                                                           aTTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTAttt                                 >  2:2583925/1‑91 (MQ=255)

                                                                 ttttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTc                           <  2:2176401/91‑1 (MQ=255)

                                                                 ttttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTCGTTc                           <  1:385391/91‑1 (MQ=255)

                                                                  tttCATTAGACTGATTTACTAATCAAAAAACTTCTATCATGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCa                          <  1:897932/91‑1 (MQ=255)

                                                                  tttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCa                          >  2:3821253/1‑91 (MQ=255)

                                                                  tttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCa                          <  1:2498024/91‑1 (MQ=255)

                                                                    tCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCata                        <  1:1284371/91‑1 (MQ=255)

                                                                     cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                       >  1:3283363/1‑91 (MQ=255)

                                                                     cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                       >  2:1369560/1‑91 (MQ=255)

                                                                     cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                       <  2:914584/91‑1 (MQ=255)

                                                                         aGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAt                   <  2:3381519/91‑1 (MQ=255)

                                                                          gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAtt                  >  1:344097/1‑91 (MQ=255)

                                                                           aCTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAttt                 <  1:1141930/91‑1 (MQ=255)

                                                                            cTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTa                <  1:3452258/91‑1 (MQ=255)

                                                                            cTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTa                >  1:597210/1‑91 (MQ=255)

                                                                              gATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATc              >  2:1742212/1‑91 (MQ=255)

                                                                               aTTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCt             <  1:3115016/91‑1 (MQ=255)

                                                                               aTTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCt             >  2:2030052/1‑91 (MQ=255)

                                                                                  tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg          <  1:3725885/91‑1 (MQ=255)

                                                                                  tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg          >  2:1970183/1‑91 (MQ=255)

                                                                                  tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg          <  2:595521/91‑1 (MQ=255)

                                                                                  tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg          <  2:2299783/91‑1 (MQ=255)

                                                                                  tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg          <  1:2360461/91‑1 (MQ=255)

                                                                                   aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgc         <  2:3485051/91‑1 (MQ=255)

                                                                                    cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgcg        >  2:3127527/1‑91 (MQ=255)

                                                                                      aaTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCt      >  2:2712626/1‑91 (MQ=255)

                                                                                       aTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTa     <  2:3927637/91‑1 (MQ=255)

                                                                                        tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTAc    >  1:3819619/1‑91 (MQ=255)

                                                                                         cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg   <  1:1863958/91‑1 (MQ=255)

                                                                                         cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg   <  1:1457859/91‑1 (MQ=255)

                                                                                         cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg   >  2:285110/1‑91 (MQ=255)

                                                                                          aaaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGa  >  2:2518908/1‑91 (MQ=255)

                                                                                          aaaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGa  <  1:2589106/91‑1 (MQ=255)

ACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGA  >  USA300TCH1516_ALE/2681319‑2681499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.