| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2684279 = | 151 (0.740) | 12 (0.070) | 9/136 | NT | 8.3% | intergenic (+38/+132) | mvaS/ogt | Hydroxymethylglutaryl‑CoA synthase/Methylated‑DNA‑‑protein‑cysteine methyltransferase |
| ? | USA300TCH1516_ALE | 2684320 = | 138 (0.800) | intergenic (+79/+91) | mvaS/ogt | Hydroxymethylglutaryl‑CoA synthase/Methylated‑DNA‑‑protein‑cysteine methyltransferase | |||||
CAATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2684379‑2684279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTATA > USA300TCH1516_ALE/2684320‑2684408 CAATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGT > 2:970001/1‑91CAATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGT < 2:2621798/91‑1CAATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGT < 2:250747/91‑1CAATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGT > 1:2318698/1‑91 AATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTC < 1:2049175/91‑1 AATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTC > 1:2201292/1‑91 AATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTC > 2:2008712/1‑91 ATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCT < 1:849834/91‑1 ATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCT > 2:170009/1‑91 AATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTA < 1:393514/91‑1 AATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTA < 1:3842700/91‑1 AATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTA < 2:2118115/91‑1 ATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTAC < 2:3889214/91‑1 ATGTGTCAAATAGGCATAAGGAATGCATTCAATACGAAGTGTAATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTAC < 2:3888948/91‑1 TGTGTCAAATATGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACT < 2:1802061/91‑1 TGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACT < 2:2055099/91‑1 TGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACT < 1:3449773/91‑1 TGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACT < 1:3450041/91‑1 GTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTG < 2:1999110/91‑1 GTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTG > 1:585736/1‑91 GTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTG > 2:981083/1‑91 TGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTGC > 2:1276226/1‑91 GTCAAATAGGCATATTGAATTCACTCAATACGAAGTGTTATAAGTAGAGAGCAGTAGTAAGACGATTTC‑AATTAGAAGTGGTCCTACTGCT < 2:3671836/91‑1 TCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTGCTG < 2:2907262/91‑1 TCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTGCTG < 2:2907121/91‑1 TCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTGCTG > 2:213181/1‑91 AAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACCACTTCTAATT‑GAAATCGTCTTACTGCTGTT < 1:3751380/91‑1 GTAAGACGATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTCTTTGACACAT > 2:1233418/1‑91 AAGACGATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTA > 1:3655388/1‑91 AGACGATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGACTGAATTCATTATGCCTACTTGAAACATTAT > 2:3510857/1‑91 GACGATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATT > 2:1818369/1‑91 ACGATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTG > 2:558835/1‑91 CGATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGA > 1:107670/1‑91 GATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAA > 2:3920123/1‑91 GATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAA > 1:2193537/1‑91 GATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAA > 2:3920226/1‑91 GATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAA > 2:1408942/1‑91 GATTTC‑AATTAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAA > 1:1260826/1‑91 TAGAAGTGGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTA > 1:1907181/1‑91 GTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGG > 2:2075820/1‑91 TCTTTCTGCTGTTCTCTTTTTATAGCACTTCGTATTGATTGATTTCATTATGCCTATTTGACTCATTATTGAAGTTTTCCTAATGCCTGGA < 2:3096602/91‑1 TCTTACTGCTGTTCTCTATTTATATCACTTCGTATTGAATGAACTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGg < 2:514109/91‑2 TCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTCATGCCTGGA > 2:2643133/1‑91 TCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGA < 2:3299075/91‑1 TCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGA < 2:514031/91‑1 TCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGA < 2:514095/91‑1 TCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGA > 2:1449090/1‑91 TCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCATAATGCCTGGA > 2:525916/1‑91 CTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGAT > 1:1730881/1‑91 CTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGAT > 1:3342719/1‑91 TACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCC < 1:3359578/91‑1 TACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCC > 1:3722700/1‑91 ACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCT > 1:2495532/1‑91 CTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTT > 1:748028/1‑91 GCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGGCACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTA > 1:1334683/1‑91 CTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTAT < 2:2230310/91‑1 TGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTATA > 2:360113/1‑91 TGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTATA > 1:1331031/1‑91 TGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTATA > 1:2612544/1‑91 CAATAATGTGTCAAATAGGCATAATGAATTCATTCAATACGAAGTGTTATAAATAGAGAACAGCAGTAAGACGATTTC‑AATTAGAAGTGGTCTTACTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2684379‑2684279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTATA > USA300TCH1516_ALE/2684320‑2684408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |