BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2684279 =	151 (0.740)	12 (0.070)	9/136	NT	8.3%	intergenic (+38/+132)	mvaS/ogt	Hydroxymethylglutaryl‑CoA synthase/Methylated‑DNA‑‑protein‑cysteine methyltransferase
*	?	USA300TCH1516_ALE	2684320 =	138 (0.800)	12 (0.070)	9/136	NT	8.3%	intergenic (+79/+91)	mvaS/ogt	Hydroxymethylglutaryl‑CoA synthase/Methylated‑DNA‑‑protein‑cysteine methyltransferase

Only 100 of 215 total aligned reads displayed.

GACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTATA  >  USA300TCH1516_ALE/2684231‑2684408

aaataggcataatgaattcattcaatacgaagtgttataaatagagaacagcagtaagaccacttctaattgaaatcgtcttactgctgtt                                                                                         <  1:3751380‑M2/2‑1 (MQ=255)

 aCCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTtc                                                                                        <  1:2210151/91‑1 (MQ=255)

  ccAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTtct                                                                                       >  2:1533201/1‑91 (MQ=255)

   cAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTtctc                                                                                      <  1:2360405/91‑1 (MQ=255)

     gagTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTa                                                                                    >  1:3434768/1‑91 (MQ=255)

     gagTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTa                                                                                    >  1:2018741/1‑91 (MQ=255)

     gagTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTa                                                                                    >  2:3691514/1‑91 (MQ=255)

      agtagtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTAt                                                                                   >  1:68205/1‑91 (MQ=255)

      agtagtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTAt                                                                                   >  1:505383/1‑91 (MQ=255)

      agtagtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTAt                                                                                   >  2:2519791/1‑91 (MQ=255)

      agtagtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTAt                                                                                   >  1:337844/1‑91 (MQ=255)

        tagtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGGTGTTCTCTAttt                                                                                 <  1:3026129/91‑1 (MQ=255)

        tagtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTAttt                                                                                 >  2:61571/1‑91 (MQ=255)

         agtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTta                                                                                >  2:2972465/1‑91 (MQ=255)

          gtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTtat                                                                               >  2:791205/1‑91 (MQ=255)

          gtCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTtat                                                                               >  2:859063/1‑91 (MQ=255)

           tCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTtata                                                                              <  1:3438389/91‑1 (MQ=255)

            cGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATaa                                                                             <  1:947244/91‑1 (MQ=255)

             ggTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAac                                                                            <  1:2579937/91‑1 (MQ=255)

             ggTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAac                                                                            <  1:134805/91‑1 (MQ=255)

             ggTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAac                                                                            >  1:2757756/1‑91 (MQ=255)

              gtgtATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAaca                                                                           <  2:710487/91‑1 (MQ=255)

              gtgtATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAaca                                                                           >  2:3347290/1‑91 (MQ=255)

               tgtATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAacac                                                                          <  1:1034874/91‑1 (MQ=255)

                gtATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACt                                                                         <  2:2002119/91‑1 (MQ=255)

                 tATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACtt                                                                        <  1:3115782/91‑1 (MQ=255)

                 tATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACtt                                                                        <  2:3922936/91‑1 (MQ=255)

                 tATTTAAAACACATACAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACtt                                                                        >  2:1943768/1‑91 (MQ=255)

                  aTTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTc                                                                       <  2:1637810/91‑1 (MQ=255)

                  aTTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTc                                                                       <  2:3656485/91‑1 (MQ=255)

                   tttAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCg                                                                      >  2:234282/1‑91 (MQ=255)

                   tttAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCg                                                                      >  2:956680/1‑91 (MQ=255)

                       aaaCACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTAtt                                                                  >  1:2283372/1‑91 (MQ=255)

                        aaCACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtg                                                                 <  1:3564879/91‑1 (MQ=255)

                        aaCACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtg                                                                 <  2:1550671/91‑1 (MQ=255)

                         acacATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtga                                                                <  2:3713319/91‑1 (MQ=255)

                         acacATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtga                                                                <  1:2397091/91‑1 (MQ=255)

                          cacaTATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtgaa                                                               <  1:1006092/91‑1 (MQ=255)

                            caTATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtgactg                                                             >  2:1123959/1‑91 (MQ=255)

                            caTATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtgaatg                                                             >  1:26692/1‑91 (MQ=255)

                            caTATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtgaatg                                                             >  2:1123868/1‑91 (MQ=255)

                             atatAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtgaatga                                                            >  1:2329323/1‑91 (MQ=255)

                              tataATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATtgaatgaa                                                           <  2:1589195/91‑1 (MQ=255)

                               ataataAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTgaatgaat                                                          <  2:3281022/91‑1 (MQ=255)

                               ataataAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTgaatgaat                                                          <  1:2471481/91‑1 (MQ=255)

                                taataaAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAAtt                                                         >  2:2093653/1‑91 (MQ=255)

                                 aataaAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAGTTc                                                        >  2:3956067/1‑91 (MQ=255)

                                 aataaAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTc                                                        <  1:2129884/91‑1 (MQ=255)

                                    aaaaCCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCAtt                                                     <  1:366905/91‑1 (MQ=255)

                                     aaaCCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTa                                                    <  1:2474284/91‑1 (MQ=255)

                                      aaCCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTAt                                                   <  1:3250727/91‑1 (MQ=255)

                                      aaCCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTAt                                                   >  2:1790256/1‑91 (MQ=255)

                                       aCCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTAGTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATg                                                  <  2:3549071/91‑1 (MQ=255)

                                        ccTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGc                                                 >  1:1116981/1‑91 (MQ=255)

                                        ccTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTAATGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGc                                                 >  2:2550057/1‑91 (MQ=255)

                                         cTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGcc                                                <  1:2811532/91‑1 (MQ=255)

                                         cTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGcc                                                >  1:2620597/1‑91 (MQ=255)

                                          tAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCt                                               >  2:669179/1‑91 (MQ=255)

                                           aaaaGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTa                                              >  2:127338/1‑91 (MQ=255)

                                            aaaGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTAt                                             <  1:381565/91‑1 (MQ=255)

                                             aaGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTAtt                                            >  2:1687848/1‑91 (MQ=255)

                                             aaGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTAtt                                            >  2:2481758/1‑91 (MQ=255)

                                                CAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGa                                         <  2:2907121‑M1/91‑1 (MQ=255)

                                                   CAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGacac                                      >  1:585736‑M1/1‑91 (MQ=255)

                                                    AGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGAcaca                                     <  2:2055099‑M1/91‑1 (MQ=255)

                                                    AGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGAcaca                                     <  1:3450041‑M1/91‑1 (MQ=255)

                                                    AGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCATATTTGAcaca                                     <  2:1802061‑M1/91‑1 (MQ=255)

                                                     GTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACat                                    <  2:3889214‑M1/91‑1 (MQ=255)

                                                      TAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACatt                                   <  1:3842700‑M1/91‑1 (MQ=255)

                                                        agacgatttcaattagaagtggtcttactgctgTTCTCTATTTATAACACTTCGTATTGACTGAATTCATTATGCCTACTTGAAACattat                                 >  2:3510857‑M2/34‑91 (MQ=255)

                                                        AGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACattat                                 <  1:849834‑M1/91‑1 (MQ=255)

                                                         GACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACattatt                                >  1:2201292‑M1/1‑91 (MQ=255)

                                                          acgatttcaattagaagtggtcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTg                               >  2:558835‑M2/32‑91 (MQ=255)

                                                           cgatttcaattagaagtggtcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGa                              >  1:107670‑M2/31‑91 (MQ=255)

                                                            gatttcaattagaagtggtcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGaa                             >  2:1408942‑M2/30‑91 (MQ=255)

                                                            gatttcaattagaagtggtcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGaa                             >  2:3920123‑M2/30‑91 (MQ=255)

                                                              cTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGt                           >  1:2818748/1‑91 (MQ=255)

                                                                tCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGttt                         >  2:1216459/1‑91 (MQ=255)

                                                                 cTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGtttt                        <  2:2719627/91‑1 (MQ=255)

                                                                 cTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGtttt                        <  2:1823461/91‑1 (MQ=255)

                                                                  tAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTc                       <  1:1507808/91‑1 (MQ=255)

                                                                  tAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTACTTGACACATTATTGAAGTTTTc                       >  2:3185154/1‑91 (MQ=255)

                                                                   aaTTGAAATCGTCTTCCTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCAATATGCCTATTTGACACATTATTGAAGTTTTcc                      >  1:3363259/1‑91 (MQ=255)

                                                                   aaTTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTcc                      >  1:407805/1‑91 (MQ=255)

                                                                   aaTTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTcc                      <  2:1189218/91‑1 (MQ=255)

                                                                    aTTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCt                     >  1:597702/1‑91 (MQ=255)

                                                                     ttGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTa                    >  1:456871/1‑91 (MQ=255)

                                                                       gAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAAt                  <  2:3753650/91‑1 (MQ=255)

                                                                         aaTCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGc                <  1:788087/91‑1 (MQ=255)

                                                                           tCGTCTTACTGCTGTTCTCTATTTATAACACTCCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCt              <  1:3355146/91‑1 (MQ=255)

                                                                            cGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTg             >  1:1917832/1‑91 (MQ=255)

                                                                              tctttctgctgTTCTCTTTTTATAGCACTTCGTATTGATTGATTTCATTATGCCTATTTGACTCATTATTGAAGTTTTCCTAATGCCTGGa           <  2:3096602‑M2/80‑1 (MQ=255)

                                                                              tcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTCATGCCTGGa           >  2:2643133‑M2/12‑91 (MQ=255)

                                                                              tcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGa           <  2:514095‑M2/80‑1 (MQ=255)

                                                                              tcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGa           <  2:3299075‑M2/80‑1 (MQ=255)

                                                                              tcttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCATAATGCCTGGa           >  2:525916‑M2/12‑91 (MQ=255)

                                                                               cttactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGAt          >  1:1730881‑M2/11‑91 (MQ=255)

                                                                                 tactgctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATcc        >  1:3722700‑M2/9‑91 (MQ=255)

                                                                                      ctgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTtat   <  2:2230310‑M2/88‑1 (MQ=255)

                                                                                       tgTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTtata  >  1:1331031‑M2/3‑91 (MQ=255)

GACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTATAACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGGATCCTTTATA  >  USA300TCH1516_ALE/2684231‑2684408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.