| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2693379 | 154 (0.760) | 20 (0.120) | 13/136 | NT | 13.1% | intergenic (+50/+306) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase |
| ? | USA300TCH1516_ALE | = 2693404 | 134 (0.780) | intergenic (+75/+281) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase | |||||
CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2693278‑2693379‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgatagtAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT < USA300TCH1516_ALE/2693404‑2693315 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A < 2:1789217/91‑1CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A < 1:1297317/91‑1CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A > 2:695500/1‑91CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A < 2:2150986/91‑1 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA > 1:996798/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA > 1:2989035/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA > 1:15235/1‑91 AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA > 1:1694405/1‑91 GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA < 1:257783/91‑1 ATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAAC < 1:3756341/91‑1 ATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAAC < 2:549639/91‑1 TATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACG < 2:153918/91‑1 TATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACG > 2:1830210/1‑91 TATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACG > 1:404318/1‑91 ATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGA < 2:1751321/91‑1 TTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGAT < 2:2015700/91‑1 TTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGAT > 1:1013833/1‑91 TGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATA < 1:2053430/91‑1 GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG > 1:2693522/1‑91 ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT < 2:3109769/91‑1 ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT < 1:142651/91‑1 TTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACAC < 1:162698/91‑1 AATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACG < 2:910154/91‑1 TCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACG < 2:835925/91‑1 TCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACGTG < 2:735296/91‑1 CAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTG < 1:3389503/91‑1 ATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGT < 1:592854/91‑1 ATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGT < 1:592839/91‑1 ATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTA < 1:3399146/91‑1 TATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTAC < 2:99578/91‑1 ATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACA < 1:514192/91‑1 ATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACA < 1:3023963/91‑1 TTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACA < 2:1768354/91‑1 AAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTA < 1:719618/91‑1 ATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCG < 2:1272043/91‑1 ATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCG < 2:1272058/91‑1 TTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGT < 1:1100032/91‑1 TAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGT < 1:3014173/91‑1 TAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTT < 1:274349/91‑1 AATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTT < 1:2517107/91‑1 GTAGATGAGAAACTCATGAGCGTTACCAACATTCATTATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTAT < 2:1119024/91‑1 AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT < 1:1254649/91‑1 AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT < 1:154125/91‑1 AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT > 2:3795470/1‑91 ACGATAGTAGTACACGCATTCATTAACGTGTACACTATCGTCTTTATTATGAATGTTGGTCACGCTCATGAGTTTCTCATCTACTATTTAA > 1:2822715/1‑91 CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT < 1:949658/91‑1 CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT < 1:1858700/91‑1 CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT > 2:2287421/1‑91 CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT > 2:273223/1‑91 GATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATC > 1:1485409/1‑91 GATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATC > 1:1484973/1‑91 GATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATC < 2:2034042/91‑1 GATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATC > 1:1486044/1‑91 ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT < 1:1353688/91‑1 ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT > 2:836623/1‑91 ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT > 2:2161947/1‑91 ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT > 2:3404920/1‑91 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT > 2:18093/1‑91 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT < 2:3795237/91‑1 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT < 2:2811780/91‑1 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT > 1:312685/1‑91 TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT < 1:3267817/91‑1 AGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTA > 1:257612/1‑91 AGTACTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATATTA > 1:3116274/1‑91 GTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAA > 1:3355125/1‑91 GTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAA < 1:1406567/91‑1 GTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAA > 1:3354976/1‑91 GTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAA > 1:3355073/1‑91 TAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT < 2:1580619/91‑1 CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2693278‑2693379‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgatagtAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT < USA300TCH1516_ALE/2693404‑2693315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |