| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2696548 = | 156 (0.770) | 16 (0.090) | 11/140 | NT | 11.2% | intergenic (+100/‑140) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A |
| ? | USA300TCH1516_ALE | 2696587 = | 117 (0.660) | intergenic (+139/‑101) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A | |||||
ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696587‑2696676 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAACGAAAAAGAGAGATTGGCGTGCAAACATTGGACAAC > 2:1265133/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:951286/1‑91ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAAC > 2:784170/1‑91ACCCCCTATAGGTATATAAGTCAATCGTCGCGTTTTACTTTTACCAATCTTAAACAGAAAAAGAGCGACTGCCGTGCAAACATTGCACAAC > 2:1488025/1‑91 CCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAA > 1:1090984/1‑91 CCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAA < 2:2196582/91‑1 CCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAA < 2:2196654/91‑1 CCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAA < 1:3093069/91‑1 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT > 1:3267019/1‑91 CCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAAT > 1:2567446/1‑91 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC > 2:1808630/1‑91 CCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATC > 2:1134885/1‑91 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTATCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 1:712415/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 2:1005161/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 2:12732/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 1:986113/91‑1 CTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCT < 1:711687/91‑1 TATAGGTATATAAGTAAATAGTTGCGTATTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTC > 2:122338/1‑91 TAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTC < 1:367599/91‑1 AGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT < 2:440432/91‑1 TATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAATGTTTGCACGGCAATCTCTCTTTTTC < 1:3456682/91‑1 TATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAATGTTTGCACGGCAATCTCTCTTTTTC < 1:3456874/91‑1 TATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAATGTTTGCACGGCAATCTCTCTTTTTC < 1:3456472/91‑1 AAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTA > 1:108043/1‑91 AAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACC > 1:2009851/1‑91 AAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACC > 1:875864/1‑91 AAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACC > 2:998957/1‑91 AAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTCTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACC > 2:998885/1‑91 GAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTA > 1:1006034/1‑91 GAGATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATA > 2:1801520/1‑91 GATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGG > 1:3321392/1‑91 GATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGG > 1:1727695/1‑91 ATTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGG > 1:3835810/1‑91 TTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGG > 1:892243/1‑91 TTGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGG > 2:3384746/1‑91 TGCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGG > 1:1250721/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTTAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 2:187562/1‑91 GCCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGT > 2:2795981/1‑91 CCGTGCAAACATTGCACAACAATCTCTCTTTTTCTTTCTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTA > 1:3344936/1‑91 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG > 2:1531918/1‑91 CAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATG < 1:1516117/91‑1 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT > 2:2284243/1‑91 TCTCTCTTTTTCTTTTTAAAATTGGTAAAAGGAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAT < 2:836766/91‑1 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 2:1299151/1‑91 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 1:3407487/1‑91 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC > 1:3407412/1‑91 CTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATC < 1:1470358/91‑1 TCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCA < 1:1049452/91‑1 CTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCAC > 1:1687753/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA > 2:563262/1‑91 TCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACA > 2:563341/1‑91 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG > 2:3846044/1‑91 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG < 2:3122265/91‑1 CTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAG > 1:582674/1‑91 TTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG < 1:1206458/91‑1 ACCCCCTATAGGTATATAAGTCAATCGTTGCGTTTTACTTTTACCAATTTTAAAAAGAAAAAGAGAGATTGCCGTGCAAACATTGCACAACAATCTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2696647‑2696548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGG > USA300TCH1516_ALE/2696587‑2696676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |