BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2696548 =	156 (0.770)	16 (0.090)	11/140	NT	11.2%	intergenic (+100/‑140)	USA300HOU_RS13875/copA	hypothetical protein/Copper‑exporting P‑type ATPase A
*	?	USA300TCH1516_ALE	2696587 =	117 (0.660)	16 (0.090)	11/140	NT	11.2%	intergenic (+139/‑101)	USA300HOU_RS13875/copA	hypothetical protein/Copper‑exporting P‑type ATPase A

Only 100 of 220 total aligned reads displayed.

GAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCT  >  USA300TCH1516_ALE/2696458‑2696638

gAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTa                                                                                            <  2:640781/91‑1 (MQ=255)

gAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTa                                                                                            <  2:1127684/91‑1 (MQ=255)

cctgtgattcattgttacacgtctaatgtaccccctataggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaa                                                                                            <  1:1206458‑M1/1‑1 (MQ=255)

  tgtgattcattgttacacgtctaatgtaccccctataggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaaga                                                                                          >  2:563262‑M1/89‑91 (MQ=255)

  aTTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTaga                                                                                          <  1:1450721/91‑1 (MQ=255)

  aTTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTaga                                                                                          <  2:2714066/91‑1 (MQ=255)

  aTTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTaga                                                                                          <  1:2212850/91‑1 (MQ=255)

   ttGCGAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagag                                                                                         >  1:3278802/1‑91 (MQ=255)

   ttGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagag                                                                                         >  2:2900572/1‑91 (MQ=255)

   ttGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagag                                                                                         <  1:579897/91‑1 (MQ=255)

   ttGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAAGATCAATTACGACTTCTTTTATATAGATGCTAAGTagag                                                                                         <  2:1484795/91‑1 (MQ=255)

    tgattcattgttacacgtctaatgtaccccctataggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaagaga                                                                                        <  1:1049452‑M1/5‑1 (MQ=255)

     gattcattgttacacgtctaatgtaccccctataggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaagagag                                                                                       >  1:3407412‑M1/86‑91 (MQ=255)

     gCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagagag                                                                                       <  1:2456723/91‑1 (MQ=255)

     gCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagagag                                                                                       <  1:3837063/91‑1 (MQ=255)

     gCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagagag                                                                                       >  1:1937449/1‑91 (MQ=255)

     gCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTagagag                                                                                       >  2:3859971/1‑91 (MQ=255)

      attcattgttacacgtctaatgtaccccctataggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAgagaga                                                                                      >  2:2284243‑M1/85‑91 (MQ=255)

       aaaTCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAt                                                                                     >  1:1591891/1‑91 (MQ=255)

        aaTCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAtt                                                                                    >  2:993423/1‑91 (MQ=255)

         aTCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttg                                                                                   <  1:636239/91‑1 (MQ=255)

         aTCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttg                                                                                   <  1:1810274/91‑1 (MQ=255)

         aTCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttg                                                                                   <  1:2330441/91‑1 (MQ=255)

         aTCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttg                                                                                   <  1:341161/91‑1 (MQ=255)

          tCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttgt                                                                                  >  2:1937248/1‑91 (MQ=255)

           ccAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttgtt                                                                                 <  2:814406/91‑1 (MQ=255)

            cAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGAttgttg                                                                                <  1:2517300/91‑1 (MQ=255)

             aGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATtgttgt                                                                               <  2:85126/91‑1 (MQ=255)

             aGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATtgttgt                                                                               <  1:1679394/91‑1 (MQ=255)

              gAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTtgtg                                                                              <  2:1063474/91‑1 (MQ=255)

              gAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTtgtg                                                                              <  1:1146144/91‑1 (MQ=255)

               aaGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGc                                                                             >  2:2056543/1‑91 (MQ=255)

               aaGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGc                                                                             >  2:2203940/1‑91 (MQ=255)

                aGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCa                                                                            >  2:2968852/1‑91 (MQ=255)

                  tCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAAt                                                                          <  2:1087034/91‑1 (MQ=255)

                   cATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATg                                                                         <  1:2125113/91‑1 (MQ=255)

                   cATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATg                                                                         <  2:1850324/91‑1 (MQ=255)

                   cATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGACAGATTGTTGTGCAATg                                                                         >  2:3744524/1‑91 (MQ=255)

                      ttAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGttt                                                                      >  2:1631645/1‑91 (MQ=255)

                       tAAGTTTTACCTTTCATTCATACGTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTg                                                                     <  2:1077660/91‑1 (MQ=255)

                       tAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGAGTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTg                                                                     <  1:3142147/91‑1 (MQ=255)

                       tAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTg                                                                     <  1:2940130/91‑1 (MQ=255)

                        aaGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGc                                                                    <  2:923167/91‑1 (MQ=255)

                          gTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCAc                                                                  >  2:3378608/1‑91 (MQ=255)

                           ttttACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACg                                                                 <  1:2987221/91‑1 (MQ=255)

                           ttttACCTCTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAATTAGAGAGATTGTTGTGCAATGTTTGCACg                                                                 <  2:3434950/91‑1 (MQ=255)

                            taccccctataggtatataagtcaatcgttgcgttttacttttaccaattttagaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACgg                                                                >  1:3344936‑M1/63‑91 (MQ=255)

                               cccctataggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCaa                                                             >  1:892243‑M1/60‑91 (MQ=255)

                               aCCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCaa                                                             >  1:3683242/1‑91 (MQ=255)

                               aCCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCaa                                                             >  2:231745/1‑91 (MQ=255)

                               aCCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCaa                                                             >  1:1733785/1‑91 (MQ=255)

                                 cctataggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtc                                                           >  1:3321392‑M1/58‑91 (MQ=255)

                                  tttCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtct                                                          >  2:139552/1‑91 (MQ=255)

                                   ttcattcaTACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtctc                                                         <  1:1717491/91‑1 (MQ=255)

                                    tcattcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtctct                                                        >  1:3832275/1‑91 (MQ=255)

                                    tcattcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtctct                                                        >  1:2358728/1‑91 (MQ=255)

                                     taggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtctctc                                                       >  1:1006034‑M1/54‑91 (MQ=255)

                                     cattcatACATCGTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAAtctctc                                                       <  2:3288267/91‑1 (MQ=255)

                                      attcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATctctct                                                      <  2:3105349/91‑1 (MQ=255)

                                      attcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATctctct                                                      <  2:2480370/91‑1 (MQ=255)

                                       ttcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctt                                                     <  2:2168226/91‑1 (MQ=255)

                                         catACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttt                                                   >  1:819628/1‑91 (MQ=255)

                                           tACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttc                                                 <  1:3361818/91‑1 (MQ=255)

                                            aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct                                                <  2:1159200/91‑1 (MQ=255)

                                             taagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctt                                               >  1:108043‑M1/46‑91 (MQ=255)

                                              aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt                                              <  2:805636/91‑1 (MQ=255)

                                              aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt                                              <  2:3929288/91‑1 (MQ=255)

                                                   ttAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGTAATCTCTCTTTTTCTTTTTaaa                                         >  2:3181240/1‑91 (MQ=255)

                                                    tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa                                        <  2:3390856/91‑1 (MQ=255)

                                                      atatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAtt                                      >  2:1875076/1‑91 (MQ=255)

                                                       tatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTg                                     >  1:2750724/1‑91 (MQ=255)

                                                       tatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTg                                     >  1:3254123/1‑91 (MQ=255)

                                                         ttaattaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgt                                   >  2:1285961/1‑91 (MQ=255)

                                                          taattaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgta                                  <  2:3129934/91‑1 (MQ=255)

                                                               tcGACTTCTTTTATCTGGATGCTACGTAGATAGATTGTTGTGCAATGTTTACACGGCAATCACTCTTTTTCTTTTTAAAATTGgtaaaagt                             <  2:3953991/90‑1 (MQ=255)

                                                                cGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTGTCTTTTTCTTTTTAAAATTGgtaaaagta                            >  2:2605470/1‑91 (MQ=255)

                                                                 gACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaa                           >  2:963941/1‑91 (MQ=255)

                                                                    ttcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAAc                        <  1:357300/91‑1 (MQ=255)

                                                                     tcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACg                       >  1:2309782/1‑91 (MQ=255)

                                                                       ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTACAAGTAAAACGCa                     >  2:2629724/1‑91 (MQ=255)

                                                                       ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa                     <  2:1453280/91‑1 (MQ=255)

                                                                       ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa                     >  1:1740882/1‑91 (MQ=255)

                                                                       ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa                     <  2:2445532/91‑1 (MQ=255)

                                                                       ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa                     <  1:3767960/91‑1 (MQ=255)

                                                                          tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg                  >  1:2352211/1‑91 (MQ=255)

                                                                           atataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGa                 <  1:47539/91‑1 (MQ=255)

                                                                            tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt                <  2:1790270/91‑1 (MQ=255)

                                                                            tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt                <  1:2876737/91‑1 (MQ=255)

                                                                            tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt                <  2:743462/91‑1 (MQ=255)

                                                                             ataGATGCTAAGTAGAGAGATTGTTTTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAtt               <  2:611833/91‑1 (MQ=255)

                                                                                  tGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACtt          >  2:485266/1‑91 (MQ=255)

                                                                                   gCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTta         <  2:88072/91‑1 (MQ=255)

                                                                                    cTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAACTTGGTAAAAGTAAAACGCAACGATTGACTtat        >  1:3374762/1‑91 (MQ=255)

                                                                                     tAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtata       >  1:2699759/1‑91 (MQ=255)

                                                                                     tAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtata       >  1:1529958/1‑91 (MQ=255)

                                                                                     gaaaaAGAGAGATTGCCGTGCAAACATTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtata       <  1:3456472‑M1/86‑1 (MQ=255)

                                                                                     gaaaaAGAGAGATTGCCGTGCAAACATTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtata       <  1:3456874‑M1/86‑1 (MQ=255)

                                                                                      aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat      <  1:1481035/91‑1 (MQ=255)

                                                                                        gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc    >  1:595155/1‑91 (MQ=255)

                                                                                        gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTT‑AAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc   >  2:1354312/1‑91 (MQ=255)

GAATTGCAAATCCAGAAGTCATTTAAGTTTTACCTTTCATTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCT  >  USA300TCH1516_ALE/2696458‑2696638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.