| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2696548 = | 156 (0.770) | 16 (0.090) | 11/140 | NT | 11.2% | intergenic (+100/‑140) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A |
| ? | USA300TCH1516_ALE | 2696587 = | 117 (0.660) | intergenic (+139/‑101) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A | |||||
Only 100 of 199 total aligned reads displayed.
TTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGGG > USA300TCH1516_ALE/2696497‑2696677 | ttcatACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctt < 2:2168402/91‑1 (MQ=255)ggtatataagtcaatcgttgcgttttacttttaccaattttaagaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctt > 2:998885‑M1/52‑91 (MQ=255)ggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctt > 2:998957‑M1/52‑91 (MQ=255)ggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctt > 1:875864‑M1/52‑91 (MQ=255)ggtatataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctt > 1:2009851‑M1/52‑91 (MQ=255) tatACATCCTTTAATATTAATTACTACTTCTTTTATATAGATGCTAAGTAGAGTGATTGTTGTGCAATGTTTGCACTGCAATCTCtctttt < 2:3299538/90‑1 (MQ=255) tataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaagagagattgccgtgcaatgtttgcacggcaatctctctttttc < 1:3456472‑M2/5‑1 (MQ=255) tataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaagagagattgccgtgcaatgtttgcacggcaatctctctttttc < 1:3456682‑M2/5‑1 (MQ=255) tataagtcaatcgttgcgttttacttttaccaattttaaaaagaaaaagagagattgccgtgcaatgtttgcacggcaatctctctttttc < 1:3456874‑M2/5‑1 (MQ=255) tACATCCTTTAATATTAATTACGACTTCTTTTGTATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttc < 1:3364739/91‑1 (MQ=255) tACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttc > 1:483038/1‑91 (MQ=255) aCATCCTTTAATATTAATTACGTCTTCTTTTATATCGATGCTAAGTACAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct < 2:614292/91‑1 (MQ=255) aCATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttct < 2:1159167/91‑1 (MQ=255) aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt < 2:3929370/91‑1 (MQ=255) aTCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttcttt < 2:805636/91‑1 (MQ=255) tCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCtctttttctttt < 1:974723/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTaaaa < 2:3390856/91‑1 (MQ=255) tAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTAaaaa < 2:2440102/91‑1 (MQ=255) atatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAAtt > 2:1875076/1‑91 (MQ=255) tatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTg > 2:2243527/1‑91 (MQ=255) tatTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTg > 1:3254123/1‑91 (MQ=255) ttaattaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgt > 1:2545887/1‑91 (MQ=255) attaCGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaa < 2:2462679/91‑1 (MQ=255) cGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAATATTGgtaaaagta < 2:2562529/91‑1 (MQ=255) gACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGgtaaaagtaa > 2:963941/1‑91 (MQ=255) ttcttTTATATAGACGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAACAGCAAAAc > 2:1284034/1‑91 (MQ=255) tcttTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACg > 1:2309782/1‑91 (MQ=255) ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa < 1:3767960/91‑1 (MQ=255) ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa < 2:1453280/91‑1 (MQ=255) ttttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCa > 1:1740882/1‑91 (MQ=255) tttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACgttt < 1:2357275/91‑4 (MQ=255) tttATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCaa < 2:3245738/91‑1 (MQ=255) tatataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACg > 1:2352211/1‑91 (MQ=255) atataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGa > 1:3756879/1‑91 (MQ=255) tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt < 1:2876737/91‑1 (MQ=255) tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt < 2:743462/91‑1 (MQ=255) tataGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt < 2:1790270/91‑1 (MQ=255) tataGATGCTAAGTAGAGAGATTGTTATGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGAt > 1:338707/1‑91 (MQ=255) taGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTg > 2:3140469/1‑91 (MQ=255) aGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGa < 1:2992568/91‑1 (MQ=255) gCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTta < 2:88072/91‑1 (MQ=255) aagaaaaagagagattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTta > 1:108043‑M2/47‑91 (MQ=255) cTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTATCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtat > 1:3424848/1‑91 (MQ=255) tAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtata > 1:2699759/1‑91 (MQ=255) tAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtata > 1:1529958/1‑91 (MQ=255) aaGTAGAGTGATTGTTGTGCAATGTTTGCACGGCAATCTCTGTTTTTCTTTTTATAATTGGTAAAAGTAAAACGCAACGATTGACTtatat > 2:574746/1‑91 (MQ=255) aaGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTtatat < 1:1481035/91‑1 (MQ=255) gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAc > 1:595155/1‑91 (MQ=255) gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTT‑AAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc > 2:1354312/1‑91 (MQ=255) gTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTT‑AAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc > 2:2649523/1‑91 (MQ=255) tAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATAcc < 1:1121042/91‑1 (MQ=255) AGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCt < 2:440432‑M1/91‑1 (MQ=255) gagagattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCta > 1:1006034‑M2/39‑91 (MQ=255) GAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAATACGCAACTATTTACTTATATACCtata > 2:122338‑M1/1‑91 (MQ=255) AGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAg < 1:711687‑M1/91‑1 (MQ=255) AGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAg < 2:12732‑M1/91‑1 (MQ=255) gattgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgg > 1:3321392‑M2/35‑91 (MQ=255) gaatgttgtGCAATGTTTGCACGGCAATCTCTCTGTTTCTTTTTAAAATTGGTAACATTAAAACGCAACGATTTACTTATATACTTATAgg > 2:1465200/4‑91 (MQ=255) GATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgg > 2:1808630‑M1/1‑91 (MQ=255) tgttttgtGTTATGTTTGCACGGCAATCTTTCTTTGTCTTTTTAATATGGGTAGAAGTGAAACCCAACGAGTGACTTATATACCTATCggg < 2:2615086/87‑1 (MQ=255) attgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAggg > 1:3835810‑M2/34‑91 (MQ=255) ttgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgggg > 1:892243‑M2/33‑91 (MQ=255) TTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgggg < 1:3093069‑M1/91‑1 (MQ=255) TTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAgggg < 2:2196654‑M1/91‑1 (MQ=255) tgccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAggggg > 1:1250721‑M2/32‑91 (MQ=255) gccgtgcaaacattgcacaacaatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 2:2795981‑M2/31‑91 (MQ=255) GTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 2:951286‑M1/1‑91 (MQ=255) GTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGt > 2:784170‑M1/1‑91 (MQ=255) ttgtGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAATATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTa > 2:1058469/1‑91 (MQ=255) ttgtGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTa > 1:123154/1‑91 (MQ=255) ccgtgcaaacattgcacaacaatctctctTTTTCTTTCTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTa > 1:3344936‑M2/30‑91 (MQ=255) gtgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACa > 2:1002302/1‑91 (MQ=255) gtgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACa > 2:2943944/1‑91 (MQ=255) tgCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACAt < 1:534541/91‑1 (MQ=255) aTGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGa < 1:298210/91‑1 (MQ=255) aTGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGa < 1:723641/91‑1 (MQ=255) gTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACg > 1:3575041/1‑91 (MQ=255) gTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACg > 1:523767/1‑91 (MQ=255) tttGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAATGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgt > 1:3418442/1‑91 (MQ=255) tGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtgt > 2:1744238/1‑91 (MQ=255) tGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtgt < 1:468317/91‑1 (MQ=255) tGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGAAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACgtgt < 2:2043337/91‑1 (MQ=255) gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGCCGTGTa > 1:2062823/1‑91 (MQ=255) gCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTa > 2:509061/1‑91 (MQ=255) cACGGCAATCTCTCTTTTTCTTTTTATAATTGGTAAAAGTAAAACGCAACGATTGAATTATATACTTATAGGGGGTACATTAGACGTGTaa > 2:2847605/1‑91 (MQ=255) cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa > 2:2888296/1‑91 (MQ=255) cACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTaa > 2:2390343/1‑91 (MQ=255) aCGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAAc > 1:2411027/1‑91 (MQ=255) cGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACa > 2:2430343/1‑91 (MQ=255) ggCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACaa < 1:993960/91‑1 (MQ=255) caatctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATg > 2:1531918‑M2/11‑91 (MQ=255) tctctctTTTTCTTTTTAAAATTGGTAAAAGGAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAAt < 2:836766‑M2/84‑1 (MQ=255) ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc < 1:1470358‑M2/85‑1 (MQ=255) ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc > 2:1299151‑M2/7‑91 (MQ=255) ctctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATc > 1:3407412‑M2/7‑91 (MQ=255) tctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATca < 1:1049452‑M2/86‑1 (MQ=255) ctctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATcac > 1:1687753‑M2/5‑91 (MQ=255) tctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATcaca > 2:563262‑M2/4‑91 (MQ=255) ctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAg > 2:3846044‑M2/3‑91 (MQ=255) ctTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAg < 2:3122265‑M2/89‑1 (MQ=255) | TTCATACATCCTTTAATATTAATTACGACTTCTTTTATATAGATGCTAAGTAGAGAGATTGTTGTGCAATGTTTGCACGGCAATCTCTCTTTTTCTTTTTAAAATTGGTAAAAGTAAAACGCAACGATTGACTTATATACCTATAGGGGGTACATTAGACGTGTAACAATGAATCACAGGG > USA300TCH1516_ALE/2696497‑2696677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |