| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2716742 = | 130 (0.640) | 7 (0.040) | 6/138 | NT | 5.4% | intergenic (+50/+100) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2716816 = | 132 (0.750) | intergenic (+124/+26) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein | |||||
AAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2716842‑2716742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT > USA300TCH1516_ALE/2716816‑2716905 AAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAG > 1:3646947/1‑91AAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAG < 2:2405511/91‑1 AATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT > 2:3489437/1‑91 AATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCAACACATTAGTGTCTTCAATCAGT < 1:1737193/91‑1 AATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGCAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT > 2:3489891/1‑91 ATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCACTCAGTA > 2:2756112/1‑91 ATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTA > 2:2755911/1‑91 TGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTAT < 2:3520270/91‑1 TGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTAT < 2:3520571/91‑1 GAAGTTCTCAAAAGAATAAATGGAACGCGCATATAGAGCTGAAGCGTAATGTGCACTTTGGTGCGACACATTAGTGTCTTCAATCAGTATG > 2:1084403/1‑91 GAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG > 1:3859175/1‑91 GAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG > 1:3859111/1‑91 GAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG < 1:3841684/91‑1 GAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG < 2:3464960/91‑1 GAAATGCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAGGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG < 2:240628/91‑1 AAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG > 1:1986963/1‑91 AAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG > 1:1986930/1‑91 AAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG > 1:1901524/1‑91 AAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG < 1:3217098/91‑1 AAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG < 1:1050123/91‑1 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCTATCAGTATGGG > 2:3020498/1‑91 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 1:3824699/1‑91 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 2:762691/1‑91 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 2:2547034/1‑91 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 1:421473/1‑91 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 1:1158063/1‑91 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG > 1:1152396/1‑91 AATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGAGCGACACATTAGTGTCTTCAATCAGAATGGG > 2:2547018/1‑91 ATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC > 2:2365803/1‑91 ATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC < 2:338360/91‑1 TTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT < 1:740780/91‑1 TCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT < 2:3227189/91‑1 TCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT > 1:17782/1‑91 CTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT < 2:394906/91‑1 CTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT > 1:619947/1‑91 CTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT > 1:2045896/1‑91 CTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT > 1:207290/1‑91 AATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTT > 2:2946749/1‑91 AATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTT > 2:2946756/1‑91 CCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATT > 1:56083/1‑91 CATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTC > 1:3106063/1‑91 GAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTA > 2:3200867/1‑91 AGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAG > 2:2920989/1‑91 GCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCA > 1:2495727/1‑91 GTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCC > 1:2608207/1‑91 GTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCC > 1:815166/1‑91 GTATGGGCTTTTAATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCC > 1:3046803/1‑91 ATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAT < 2:3158373/91‑1 ATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAT < 2:1088685/91‑1 ATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAT < 2:1089031/91‑1 ATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAT < 1:439541/91‑1 ATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAT > 1:860663/1‑91 ATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAT < 1:440541/91‑1 TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATA > 2:542216/1‑91 TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATA > 2:1651551/1‑91 TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATA > 1:3477481/1‑91 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAA < 2:1643376/91‑1 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAA < 1:705042/91‑1 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAA < 1:607575/91‑1 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAA < 2:3593615/91‑1 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAA > 1:230257/1‑91 GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCAGCAAGATCTTTGAACATTGCTCCATAA < 2:3592766/91‑1 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA < 2:43044/91‑1 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA > 1:746716/1‑91 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA > 2:779819/1‑91 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA < 1:3264508/91‑1 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA > 1:3206558/1‑91 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA > 1:3206513/1‑91 GCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAA < 2:3125529/91‑1 GCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGACCTTTGAACATTGCTCCATAAAA > 2:3191993/1‑91 CTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAAC > 2:1522823/1‑91 TTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCC < 2:941155/91‑1 TTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCCTCAAAACCT > 1:3283503/1‑91 TTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT < 1:93233/91‑1 TTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT > 2:3208748/1‑91 TTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT > 2:3208653/1‑91 TTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT < 1:712839/91‑1 TTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT > 1:1064999/1‑91 AAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2716842‑2716742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT > USA300TCH1516_ALE/2716816‑2716905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |