| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2716742 = | 130 (0.640) | 7 (0.040) | 6/138 | NT | 5.4% | intergenic (+50/+100) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2716816 = | 132 (0.750) | intergenic (+124/+26) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein | |||||
Only 100 of 239 total aligned reads displayed.
TTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAG > USA300TCH1516_ALE/2716652‑2716832 | tttATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACA < 2:295446‑M1/91‑1 (MQ=255)aggttttgagggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaa > 1:3283503‑M1/91‑91 (MQ=255)agggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaa > 2:3208653‑M1/91‑91 (MQ=255)agggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaa < 1:93233‑M1/1‑1 (MQ=255)agggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaa < 1:712839‑M1/1‑1 (MQ=255) aTGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAG < 2:1766857‑M1/91‑1 (MQ=255) tGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGC < 2:3095310‑M1/91‑1 (MQ=255) tttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGcc > 1:3206513‑M1/86‑91 (MQ=255) tttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGcc > 2:779819‑M1/86‑91 (MQ=255) ttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGccc > 1:230257‑M1/85‑91 (MQ=255) ttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGccc < 2:1643376‑M1/7‑1 (MQ=255) ttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGccc < 1:607575‑M1/7‑1 (MQ=255) aTCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCC > 1:3422160‑M1/1‑91 (MQ=255) tatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCa > 2:542216‑M1/84‑91 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCA > 1:3144469‑M1/1‑91 (MQ=255) tCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCA < 1:1061685‑M1/91‑1 (MQ=255) atggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCAt < 1:439541‑M1/9‑1 (MQ=255) atggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCAt < 2:3158373‑M1/9‑1 (MQ=255) atggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCAt > 1:860663‑M1/83‑91 (MQ=255) ggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaattaAAAGCCCATAc > 1:3046803‑M1/81‑91 (MQ=255) ggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATAc > 1:2608207‑M1/81‑91 (MQ=255) gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg > 2:1654574/1‑91 (MQ=255) ccAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGa > 2:2875084/1‑91 (MQ=255) caacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAt > 2:1485609/1‑91 (MQ=255) caacaaTACGGTTATATTCAAAATTAATACTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCAATACTGAt > 2:3432246/1‑91 (MQ=255) aacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAtt < 1:2740740/91‑1 (MQ=255) caaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGa > 2:929425/1‑91 (MQ=255) aaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGaa > 2:3946768/1‑91 (MQ=255) aaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGaa < 1:1462888/91‑1 (MQ=255) tACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGa < 1:2977952/91‑1 (MQ=255) tACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGa > 1:1088685/1‑91 (MQ=255) cGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGaca > 1:2246007/1‑91 (MQ=255) ggTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGacac > 1:1986968/1‑91 (MQ=255) ttATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAATCCCATACTGATTGAAGACACTa > 2:3196518/1‑91 (MQ=255) ttATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTa < 1:3474823/91‑1 (MQ=255) ttATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTa < 2:1185183/91‑1 (MQ=255) ttATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTa > 1:2107664/1‑91 (MQ=255) atTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACagagatgaagcgtaatgtg > 1:3889242‑M1/1‑72 (MQ=255) tCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATgtgt < 1:3737292/91‑1 (MQ=255) aaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc > 2:1704883/1‑91 (MQ=255) aaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc < 1:788367/91‑1 (MQ=255) tAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCa < 1:442999/91‑1 (MQ=255) atatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATg > 1:1247958/1‑91 (MQ=255) atatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATg < 2:3527279/91‑1 (MQ=255) atatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATg < 2:1132957/91‑1 (MQ=255) tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATgg < 1:724088/91‑1 (MQ=255) tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATgg < 2:1424444/91‑1 (MQ=255) tttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTg > 2:831844/1‑91 (MQ=255) ttGCTCCCGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGc > 1:3071910/1‑91 (MQ=255) cACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAtt < 2:3192498/91‑1 (MQ=255) cACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAtt < 1:617912/91‑1 (MQ=255) accaGGTATTCCCCGTAAGGTGCCCACTTACCTCATAAACAAAGCAAACACTTAATTACGACACAAATGCAACACAACATGATGCACAttc > 2:684798/4‑90 (MQ=255) cGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTAc > 1:485549/1‑91 (MQ=255) gAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACg > 2:2401044/1‑91 (MQ=255) gAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACg > 2:2327649/1‑91 (MQ=255) aGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGc < 2:2454872/91‑1 (MQ=255) aGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGc < 1:209040/91‑1 (MQ=255) ggTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCt > 1:3547365/1‑91 (MQ=255) ggTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCt > 1:2703601/1‑91 (MQ=255) gTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCtc > 2:2896754/1‑90 (MQ=255) ttGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAt > 1:396621/1‑91 (MQ=255) tGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtc < 2:3956511/91‑1 (MQ=255) gCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtct > 2:3689443/1‑91 (MQ=255) ctaaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtct > 2:2920989‑M1/31‑91 (MQ=255) ttAAGGTGCCAACTGACCTCATAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagt < 2:2820895‑M1/91‑55 (MQ=255) ttAAGGTGCCAACTGACCTCATAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagt < 2:3889242‑M1/91‑55 (MQ=255) aaGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtat > 1:699101‑M2/1‑87 (MQ=255) aaGGTGCCAACTGACCTCAGAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtat > 2:3234180‑M2/1‑87 (MQ=255) ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgg > 2:2320569‑M2/1‑85 (MQ=255) ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgg > 1:301041‑M2/1‑85 (MQ=255) ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgg > 2:2395689‑M2/1‑85 (MQ=255) ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgg > 1:1939795‑M2/1‑85 (MQ=255) gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg < 1:2346163‑M2/91‑8 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc > 1:2822206‑M2/1‑83 (MQ=255) tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggc > 1:290786‑M2/1‑83 (MQ=255) tGCCAACTGACCTCATAA‑‑AAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctt < 1:1834620‑M1/91‑63 (MQ=255) gCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggct > 1:2409485‑M2/1‑82 (MQ=255) gCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggct < 1:1149852‑M2/91‑10 (MQ=255) ccAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTTATCTCTgtatgggctt < 1:1568868‑M2/91‑11 (MQ=255) ccAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggctt < 1:3628366‑M2/91‑11 (MQ=255) aaCTGACTTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCtttt < 2:3515289/91‑1 (MQ=255) aaCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCAGTATGGGCtttt > 2:3283505/1‑91 (MQ=255) aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCttttt < 2:1352754/91‑1 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt < 2:1854128/91‑1 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt > 2:274783/1‑91 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt < 1:1593193/91‑1 (MQ=255) gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt < 2:3584856/91‑1 (MQ=255) aCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttattt > 2:1903223/1‑91 (MQ=255) ccTCAAAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatg < 2:3649645‑M1/91‑71 (MQ=255) cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTttatttat < 1:567024/91‑1 (MQ=255) cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTttatttat > 2:3629670/1‑91 (MQ=255) cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTttatttat < 1:2471379/91‑1 (MQ=255) tCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTtatttatt < 1:2295659/91‑1 (MQ=255) aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCCCTGTATGGGCTTTTTCTTTATTcc > 2:3435561/1‑90 (MQ=255) aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTg > 2:940845/1‑91 (MQ=255) aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCACTGTATCGGCTGCGTATTTATTCttttc > 2:1947119/1‑90 (MQ=255) aaaGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttg < 2:1802267‑M1/91‑81 (MQ=255) aaaGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttgtttatgaggtcagttg < 1:1012840‑M1/91‑81 (MQ=255) AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag > 1:2045896‑M1/1‑91 (MQ=255) AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag > 1:619947‑M1/1‑91 (MQ=255) | TTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAG > USA300TCH1516_ALE/2716652‑2716832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |