BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2716742 =	130 (0.640)	7 (0.040)	6/138	NT	5.4%	intergenic (+50/+100)	USA300HOU_RS13965/USA300HOU_RS13970	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	2716816 =	132 (0.750)	7 (0.040)	6/138	NT	5.4%	intergenic (+124/+26)	USA300HOU_RS13965/USA300HOU_RS13970	hypothetical protein/hypothetical protein

Only 100 of 237 total aligned reads displayed.

AACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT  >  USA300TCH1516_ALE/2716726‑2716905

 aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCttttt                                                                                          <  2:1352754/91‑1 (MQ=255)

    gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                                       <  2:1854128/91‑1 (MQ=255)

    gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                                       <  2:3584856/91‑1 (MQ=255)

    gACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                                       <  2:2762868/91‑1 (MQ=255)

    gACCCCATAAACAAAGCCCATACTGATTGACGACACTAATGTGTCGCACCACGGTG‑‑‑CCCATCACGCTTCCCCTCCGTATGGCCTTtttctt                                                                                       >  2:25132/1‑91 (MQ=255)

    aagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                                       >  2:2946756‑M1/13‑91 (MQ=255)

     aCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattt                                                                                      >  2:1666916/1‑91 (MQ=255)

     aCCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattt                                                                                      >  2:1903153/1‑91 (MQ=255)

      ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattta                                                                                     <  2:3298809/91‑1 (MQ=255)

      ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTtttattta                                                                                     >  1:2915980/1‑91 (MQ=255)

       cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTttatttat                                                                                    <  1:2471379/91‑1 (MQ=255)

       cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTttatttat                                                                                    <  1:567024/91‑1 (MQ=255)

       cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTttatttat                                                                                    >  2:3629670/1‑91 (MQ=255)

         cATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTc                                                                                  >  1:2301404/1‑91 (MQ=255)

         cATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATCTATTc                                                                                  >  2:3203934/1‑91 (MQ=255)

          aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt                                                                                 <  2:3523108/91‑1 (MQ=255)

          aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCt                                                                                 <  2:875580/91‑1 (MQ=255)

          aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCCCTGTATGGGCTTTTTCTTTATTcc                                                                                 >  2:3435561/1‑90 (MQ=255)

                AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag                                                                           >  1:619947‑M1/1‑91 (MQ=255)

                AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag                                                                           <  2:394906‑M1/91‑1 (MQ=255)

                AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgag                                                                           >  1:2045896‑M1/1‑91 (MQ=255)

                 AAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgaga                                                                          <  2:3227189‑M1/91‑1 (MQ=255)

                    CCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAtt                                                                       >  2:2547034‑M1/1‑91 (MQ=255)

                    CCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAtt                                                                       >  1:1158063‑M1/1‑91 (MQ=255)

                    CCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAtt                                                                       >  1:421473‑M1/1‑91 (MQ=255)

                    CCCATACTGATAGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAtt                                                                       >  2:3020498‑M1/1‑91 (MQ=255)

                     CCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt                                                                      >  1:1986930‑M1/1‑91 (MQ=255)

                     CCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt                                                                      >  1:1901524‑M1/1‑91 (MQ=255)

                     CCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt                                                                      <  1:1050123‑M1/91‑1 (MQ=255)

                      CATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTc                                                                     <  1:3841684‑M1/91‑1 (MQ=255)

                      CATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTc                                                                     >  1:3859175‑M1/1‑91 (MQ=255)

                      CATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCCTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGCATTTc                                                                     <  2:240628‑M1/91‑1 (MQ=255)

                      CATACTGATTGAAGACACTAATGTGTCGCACCAAAGTG‑‑‑CACATTACGCTTCAGCTCTATATGCGCGTTCCATTTATTCTTTTGAGAACTTc                                                                     >  2:1084403‑M1/1‑91 (MQ=255)

                       ATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCa                                                                    <  2:3520270‑M1/91‑1 (MQ=255)

                        TACTGAGTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAt                                                                   >  2:2756112‑M1/1‑91 (MQ=255)

                         ACTGATTGAAGACACTAATGTGTTGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt                                                                  <  1:1737193‑M1/91‑1 (MQ=255)

                         ACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt                                                                  >  2:3489437‑M1/1‑91 (MQ=255)

                          CTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAttt                                                                 >  1:3646947‑M1/1‑91 (MQ=255)

                            gATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTa                                                               >  2:1903907/1‑91 (MQ=255)

                               tGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCa                                                            >  1:863359/1‑91 (MQ=255)

                                gAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAg                                                           <  2:3623523/91‑1 (MQ=255)

                                agatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAg                                                              >  2:2920989‑M2/62‑91 (MQ=255)

                                  aGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGAc                                                         <  1:3235458/91‑1 (MQ=255)

                                  aGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGAc                                                         <  2:3709051/91‑1 (MQ=255)

                                     cacTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaa                                                      >  1:2521271/1‑91 (MQ=255)

                                      acTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaa                                                     >  1:555373/1‑91 (MQ=255)

                                        tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa                                                   <  2:1116472/91‑1 (MQ=255)

                                        tAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCGCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa                                                   <  2:3118829/91‑1 (MQ=255)

                                         aaTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaaa                                                  <  1:1623822/91‑1 (MQ=255)

                                          tagtgtCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt                                                 >  1:3475319/3‑91 (MQ=255)

                                          aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGTATTTCATTTTAGCAGACCAAAAAAt                                                 >  1:3686447/1‑91 (MQ=255)

                                          aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt                                                 >  2:2374599/1‑91 (MQ=255)

                                          aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt                                                 <  2:670100/91‑1 (MQ=255)

                                          aTGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt                                                 >  1:2281445/1‑91 (MQ=255)

                                           tgtgTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaatta                                                <  1:2166281/91‑4 (MQ=255)

                                           tgtgTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAGAtt                                                <  1:319023/91‑1 (MQ=255)

                                           tgtgTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAtt                                                >  2:2022701/1‑91 (MQ=255)

                                            gtgtCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa                                               <  1:208201/91‑1 (MQ=255)

                                            gtgtCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa                                               <  2:2193424/91‑1 (MQ=255)

                                               tCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaaa                                            >  1:3743821/1‑91 (MQ=255)

                                               tCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaaa                                            >  1:1568101/1‑91 (MQ=255)

                                               tCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaaa                                            <  1:1111664/91‑1 (MQ=255)

                                                cGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAAt                                           <  2:3403005/91‑1 (MQ=255)

                                                 gCACCATGGTGCGACACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaa                                             >  1:1766819/1‑91 (MQ=255)

                                                  cACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATgg                                         >  2:2313828/1‑91 (MQ=255)

                                                     cATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGATCAAAAAATTAAAATGgtgt                                      >  1:276350/1‑91 (MQ=255)

                                                     cATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCGTTTGAGAATTTCATTTTAGCAGCCCACAAAATTAAAATGgtgt                                      >  2:3779548/1‑91 (MQ=255)

                                                        ggTG‑‑‑CACATTATGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTAAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                                   >  2:2729358/1‑91 (MQ=255)

                                                        ggTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                                   >  2:1871446/1‑91 (MQ=255)

                                                        ggTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                                   >  1:454084/1‑91 (MQ=255)

                                                          tG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATc                                 <  1:3709045/91‑1 (MQ=255)

                                                          tG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATc                                 <  1:3709265/91‑1 (MQ=255)

                                                          tG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATc                                 <  1:831844/91‑1 (MQ=255)

                                                          tG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATATTAGCAGAACAAAAAATTAAAATGGTGTCCATc                                 <  2:2640842/91‑1 (MQ=255)

                                                          cg‑‑‑CACACTACACTTACTCTCTGTATGGGCTTTTTACTTATTCTTTTAAGAATATCAATTTAACAGCCAAAAAACTTAAAATGGTATCCacc                                 >  2:3143908/2‑89 (MQ=255)

                                                           g‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCa                                >  1:431902/1‑91 (MQ=255)

                                                           g‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTATTTTGAGAATTTCATTTTAGCAGACTACAAAATTAACATGGTGTCTATCa                                >  2:2494274/1‑91 (MQ=255)

                                                               cacaTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCaa                               <  2:2064603/91‑1 (MQ=255)

                                                               cacaTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCaa                               >  1:1354793/1‑91 (MQ=255)

                                                                acaTTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGGGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAg                              <  2:160426/91‑1 (MQ=255)

                                                                     aCGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt                         >  1:1658448/1‑91 (MQ=255)

                                                                      cGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCttt                        >  2:925728/1‑91 (MQ=255)

                                                                       gCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTg                       >  2:1419592/1‑91 (MQ=255)

                                                                        cTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGa                      >  2:1269617/1‑91 (MQ=255)

                                                                          tCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAAc                    <  1:684084/91‑1 (MQ=255)

                                                                               tctGTATGGGCTATTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGc               >  1:3050439/1‑91 (MQ=255)

                                                                                ctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCt              >  1:2657277/1‑91 (MQ=255)

                                                                                ctGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCt              >  1:1255347/1‑91 (MQ=255)

                                                                                    atgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAt          <  2:1089031‑M2/82‑1 (MQ=255)

                                                                                     tgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATa         >  2:1651551‑M2/9‑91 (MQ=255)

                                                                                     tgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATa         >  2:542216‑M2/9‑91 (MQ=255)

                                                                                      gggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaa        <  1:607575‑M2/84‑1 (MQ=255)

                                                                                      gggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaa        >  1:230257‑M2/8‑91 (MQ=255)

                                                                                       ggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaaa       >  1:746716‑M2/7‑91 (MQ=255)

                                                                                       ggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaaa       >  1:3206558‑M2/7‑91 (MQ=255)

                                                                                       ggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaaa       >  2:779819‑M2/7‑91 (MQ=255)

                                                                                        gctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGACCTTTGAACATTGCTCCATaaaa      >  2:3191993‑M2/6‑91 (MQ=255)

                                                                                            tTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCt  <  1:93233‑M2/90‑1 (MQ=255)

                                                                                            tTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCt  <  1:712839‑M2/90‑1 (MQ=255)

                                                                                            tTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCt  >  1:1064999‑M2/2‑91 (MQ=255)

AACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTG‑‑‑CACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCT  >  USA300TCH1516_ALE/2716726‑2716905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.