| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2719380 | 168 (0.820) | 9 (0.050) | 6/136 | NT | 5.3% | coding (324/705 nt) | cpnA | Cyclopentanol dehydrogenase |
| ? | USA300TCH1516_ALE | = 2719397 | 178 (1.030) | coding (341/705 nt) | cpnA | Cyclopentanol dehydrogenase | |||||
TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2719280‑2719380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaatgtattcATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT < USA300TCH1516_ALE/2719397‑2719308 TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAAC < 1:3794202/91‑1TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAAC < 1:3794669/91‑1TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAAC > 2:2080890/1‑91TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAAC < 2:2815902/91‑1TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAAC > 2:1444674/1‑91 TGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACG < 2:2652108/91‑1 TGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACG > 2:1009596/1‑91 TGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACG > 2:1285767/1‑91 TGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACG < 2:3671735/91‑1 TGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACG < 2:2655614/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 2:270747/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 2:184296/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 2:270725/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 1:1887283/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA < 1:3692795/91‑1 GATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGA > 1:3720524/1‑91 ATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAA > 1:2659219/1‑91 ATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAA > 2:604509/1‑91 TATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTCTATCAAACGAAT > 2:3283893/1‑91 TATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAAT < 2:2300719/91‑1 TATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAAT < 1:2279250/91‑1 ATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATG > 1:3939309/1‑91 ATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATG < 1:1980739/91‑1 TCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGT > 2:2904937/1‑91 TCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGT > 2:2905001/1‑91 CCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTA > 1:814121/1‑91 CCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTA > 2:63279/1‑91 CCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTA < 1:3050340/91‑1 CCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATAGCAAACGAATGTA < 1:3050747/91‑1 CTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGTACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTAT > 1:3346179/1‑91 CTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTAT < 1:144925/91‑1 TCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATT < 2:1524465/91‑1 TCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATT > 2:600151/1‑91 TCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATAACAAACGAAAGTATT > 2:599874/1‑91 CATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC > 1:3715174/1‑91 CATTAACAATGCAGGTATATATGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC > 2:3261830/1‑91 ATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCG < 2:2099530/91‑1 TCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGA < 1:237812/91‑1 CTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAA < 2:2274701/91‑1 CTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAA < 2:2274496/91‑1 CTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAA < 1:2269633/91‑1 TGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAAT < 2:2342580/91‑1 TGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAAT < 1:2851304/91‑1 GGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAATA < 1:2570585/91‑1 GTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCATCATTCGTACGATACCGAATAC < 2:3222032/91‑1 CGAATGTATTCATCATTCGTACGATGTCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAA < 2:3420273/91‑1 CGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAA < 2:446763/91‑1 CGAATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAA > 2:2774086/1‑91 AATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATT > 2:1434883/1‑91 ATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTG > 1:1673803/1‑91 ATGTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAAAGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTG > 2:3903743/1‑91 GTATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGAC < 2:2958615/91‑1 TATTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACC > 2:2044369/1‑91 TTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAG < 2:3366699/91‑1 TTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAG < 2:3366780/91‑1 TTCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAG < 2:3366942/91‑1 TCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGA > 2:453715/1‑91 TCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGA < 2:531311/91‑1 TCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGA < 1:1469288/91‑1 TCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGA > 1:3310594/1‑91 TCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGA > 1:3310866/1‑91 TCATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGA < 2:1012225/91‑1 CATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT > 2:1568235/1‑91 CATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT > 2:2326176/1‑91 CATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT > 2:2326077/1‑91 CATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGCCACGAGGAGTCAATTTGGAAGGTGCTGAAACTTGACCAGAa > 2:491907/1‑90 TTGATATCCTCATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2719280‑2719380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaatgtattcATCATTCGTACGATACCGAATACATTCGTTTGATATACTTCTTCAACGTCACGAGGTGTCAATTTGGAAGGTGCTGAAAATTGACCAGAT < USA300TCH1516_ALE/2719397‑2719308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |