BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2719380	168 (0.820)	9 (0.050)	6/136	NT	5.3%	coding (324/705 nt)	cpnA	Cyclopentanol dehydrogenase
*	?	USA300TCH1516_ALE	= 2719397	178 (1.030)	9 (0.050)	6/136	NT	5.3%	coding (341/705 nt)	cpnA	Cyclopentanol dehydrogenase

Only 100 of 266 total aligned reads displayed.

CATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCA  >  USA300TCH1516_ALE/2719290‑2719470

cATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTC                                                                                            >  1:3715174‑M1/1‑91 (MQ=255)

 aTTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCg                                                                                           >  2:3500544/1‑91 (MQ=255)

 aTTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCg                                                                                           >  2:206650/1‑91 (MQ=255)

 aTTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCg                                                                                           >  2:2643997/1‑91 (MQ=255)

 aTTAACAATGCAGGTACATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTAAAGAAGTATAACAAACGAATGTATTCg                                                                                           >  2:1566780/1‑91 (MQ=255)

  ttAACAATGCAGATATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCgg                                                                                          >  1:3025145/1‑91 (MQ=255)

     aCAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTAt                                                                                       >  2:2985303/1‑91 (MQ=255)

       aaTGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCg                                                                                     >  1:26009/1‑91 (MQ=255)

         tGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTa                                                                                   >  1:405497/1‑91 (MQ=255)

           cAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACg                                                                                 <  1:1434460/91‑1 (MQ=255)

              gTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAat                                                                              <  2:418858/91‑1 (MQ=255)

                  atCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCatcattcgtacgataccg                                                                          <  2:2099530‑M1/91‑19 (MQ=255)

                  aTCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATg                                                                          >  2:2326077‑M2/1‑90 (MQ=255)

                   tCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCatcattcgtacgataccga                                                                         <  1:237812‑M1/91‑20 (MQ=255)

                    cTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCatcattcgtacgataccgaa                                                                        <  2:2274701‑M1/91‑21 (MQ=255)

                     tGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCatcattcgtacgataccgaat                                                                       <  2:2342580‑M1/91‑22 (MQ=255)

                         cAATTTTCAGCACCTTCCAAATTGACACCTCGTGACTTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacat                                                                   >  2:3903743‑M2/1‑83 (MQ=255)

                          aaTTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacatt                                                                  >  2:1434883‑M2/1‑82 (MQ=255)

                            ttttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacattcg                                                                >  2:2774086‑M2/1‑80 (MQ=255)

                              ttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTc                                                              <  2:1000452/91‑1 (MQ=255)

                                 aGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCct                                                           >  2:3348306/1‑91 (MQ=255)

                                  gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTCTTCGGTATCGTACGACTGATGAATACATTCGTCCctc                                                          >  2:71961/1‑91 (MQ=255)

                                  gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctc                                                          <  1:2394391/91‑1 (MQ=255)

                                  gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctc                                                          >  1:2514924/1‑91 (MQ=255)

                                  gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctc                                                          >  1:1902654/1‑91 (MQ=255)

                                   ttccTTTCAAATTGACACTTCGTAACGTTGAAGAAGTATTTTAAACGTATGTATTCGTTATCGTACGAATGATGAATATATTCTTctcttt                                                         <  2:1389397/89‑3 (MQ=255)

                                   cACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctct                                                         <  2:37361/91‑1 (MQ=255)

                                   cACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctct                                                         >  1:161081/1‑91 (MQ=255)

                                    aCCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctc                                                        <  2:1329993/91‑1 (MQ=255)

                                     ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                       >  1:3572736/1‑91 (MQ=255)

                                     ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                       >  1:3445822/1‑91 (MQ=255)

                                     ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                       <  2:435550/91‑1 (MQ=255)

                                       ttCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTa                                                     <  1:286062/91‑1 (MQ=255)

                                        tCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAg                                                    >  1:1878572/1‑91 (MQ=255)

                                        tCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAg                                                    <  1:1730572/91‑1 (MQ=255)

                                         ccAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGa                                                   >  2:269908/1‑91 (MQ=255)

                                          cAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGaa                                                  <  2:3467110/91‑1 (MQ=255)

                                           aaaTTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGaaa                                                 >  2:2352082/1‑91 (MQ=255)

                                            aaTTGACACCTCGTGACGTTGAAGAAGTACCTCAAACGAATGTATTCGGTATCGTACGAATGCCGAATACCTTCGTCCCTCTCTTCGaaaa                                                >  2:1668459/1‑91 (MQ=255)

                                             aTTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGaaaaa                                               <  2:46411/91‑1 (MQ=255)

                                              ttGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAAt                                              <  1:1243699/91‑1 (MQ=255)

                                              ttGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAAt                                              <  1:3120994/91‑1 (MQ=255)

                                               tGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATc                                             >  2:907744/1‑91 (MQ=255)

                                                gACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCt                                            >  1:3916577/1‑91 (MQ=255)

                                                 acacCTCGTGACGTTGAAGAAGTATCGCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTg                                           <  2:3417834/91‑1 (MQ=255)

                                                 acacCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAAACTg                                           <  1:448612/91‑1 (MQ=255)

                                                   acCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaa                                         >  2:2042677/1‑91 (MQ=255)

                                                   acCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaa                                         <  2:3570805/91‑1 (MQ=255)

                                                   acCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaa                                         <  1:283334/91‑1 (MQ=255)

                                                    ccTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaaa                                        >  1:1039799/1‑90 (MQ=255)

                                                      tCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaacaa                                      <  2:2179761/91‑1 (MQ=255)

                                                        gTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGACCAACACTTAAAAAAATCTGAACAAcc                                    <  2:1941185/91‑1 (MQ=255)

                                                         tGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCt                                   <  1:2085708/91‑1 (MQ=255)

                                                          gACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtg                                  <  2:1603117/91‑1 (MQ=255)

                                                           aCGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgt                                 <  1:898387/91‑1 (MQ=255)

                                                           aCGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgt                                 <  1:803737/91‑1 (MQ=255)

                                                            cGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgtt                                <  1:3108940/91‑1 (MQ=255)

                                                              ttGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgttgt                              <  1:2215673/91‑1 (MQ=255)

                                                              ttGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgttgt                              >  2:3144967/1‑91 (MQ=255)

                                                                gaagaaGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTgtcg                            <  1:1515229/91‑1 (MQ=255)

                                                                    aagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCaa                        <  1:2957815/91‑1 (MQ=255)

                                                                      gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTGGTCAACg                      >  1:1963146/1‑91 (MQ=255)

                                                                      gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                      >  1:170869/1‑91 (MQ=255)

                                                                      gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                      >  1:1458994/1‑91 (MQ=255)

                                                                      gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                      >  1:3203914/1‑91 (MQ=255)

                                                                       tataTCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGt                     <  1:637934/91‑1 (MQ=255)

                                                                           tCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCa                 <  1:3769085/91‑1 (MQ=255)

                                                                            cAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCaa                >  1:1131469/1‑91 (MQ=255)

                                                                            cAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCaa                <  1:2716336/91‑1 (MQ=255)

                                                                             aaaCGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAg               <  1:294292/91‑1 (MQ=255)

                                                                              aaCGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGt              <  1:2824152/91‑1 (MQ=255)

                                                                                cGAATGTATTCGGTATCGTACGAATGATGAATACATGCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTgg            <  2:1570319/91‑1 (MQ=255)

                                                                                  aaTGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGtt          >  1:3835602/1‑91 (MQ=255)

                                                                                   aTGTATTCatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattg         >  1:1673803‑M1/1‑8 (MQ=255)

                                                                                   aTGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGttt         <  2:2329086/91‑1 (MQ=255)

                                                                                    tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa        >  2:2284307/1‑91 (MQ=255)

                                                                                     gTATTCatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgac       <  2:2958615‑M1/91‑86 (MQ=255)

                                                                                     gTATTCGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgac       <  2:3222032‑M2/91‑69 (MQ=255)

                                                                                     gTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAg       <  2:814121/91‑1 (MQ=255)

                                                                                     gTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAg       <  1:2245743/91‑1 (MQ=255)

                                                                                      tATTCGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgacc      <  1:2570585‑M2/91‑70 (MQ=255)

                                                                                      tATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAgg      >  2:3072915/1‑91 (MQ=255)

                                                                                      tATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAgg      >  2:2446590/1‑91 (MQ=255)

                                                                                      tATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTCTAgg      >  2:1041568/1‑91 (MQ=255)

                                                                                       aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTGGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCCCGCGGTTAAGGt     >  2:3831149/1‑91 (MQ=255)

                                                                                       aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTCTCAAGTGGCTTAGGt     >  2:2534438/1‑91 (MQ=255)

                                                                                       aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGt     >  1:952147/1‑91 (MQ=255)

                                                                                       aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGt     >  2:1278157/1‑91 (MQ=255)

                                                                                        ttCatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccag    <  2:3366780‑M1/91‑89 (MQ=255)

                                                                                        ttCatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccag    <  2:3366942‑M1/91‑89 (MQ=255)

                                                                                        ttCGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccag    <  1:2269633‑M2/91‑72 (MQ=255)

                                                                                        ttCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGtt    >  2:1859169/1‑91 (MQ=255)

                                                                                        ttCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGtt    <  1:661147/91‑1 (MQ=255)

                                                                                         tcatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccaga   >  1:3310594‑M1/1‑2 (MQ=255)

                                                                                         tcatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccaga   >  2:453715‑M1/1‑2 (MQ=255)

                                                                                         tcatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccaga   >  1:3310866‑M1/1‑2 (MQ=255)

                                                                                         tcatcattcgtacgataccgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccaga   <  2:531311‑M1/91‑90 (MQ=255)

                                                                                          catcattcgtacgataccgaatacattcgtttgatatacttcttcaacgccacgaggagtcaatttggaaggtgctgaaacttgaccagaa  >  2:491907‑M1/1‑1 (MQ=255)

                                                                                          cGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCa  >  1:412728/1‑91 (MQ=255)

                                                                                          cGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCa  >  2:2399916/1‑91 (MQ=255)

CATTAACAATGCAGGTATATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCA  >  USA300TCH1516_ALE/2719290‑2719470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.