BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2719380	168 (0.820)	9 (0.050)	6/136	NT	5.3%	coding (324/705 nt)	cpnA	Cyclopentanol dehydrogenase
*	?	USA300TCH1516_ALE	= 2719397	178 (1.030)	9 (0.050)	6/136	NT	5.3%	coding (341/705 nt)	cpnA	Cyclopentanol dehydrogenase

Only 100 of 228 total aligned reads displayed.

ATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACAAA  >  USA300TCH1516_ALE/2719308‑2719487

aTCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATg                                                                                           >  2:1568235‑M2/1‑90 (MQ=255)

aTCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATg                                                                                           >  2:2326077‑M2/1‑90 (MQ=255)

 tCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATga                                                                                          <  2:1012225‑M2/91‑3 (MQ=255)

 tCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATga                                                                                          >  1:3310594‑M2/1‑89 (MQ=255)

  cTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaa                                                                                         <  2:3366780‑M2/91‑4 (MQ=255)

    ggTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaata                                                                                       >  2:2044369‑M2/1‑86 (MQ=255)

       cAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacat                                                                                    >  1:1673803‑M2/1‑83 (MQ=255)

          ttttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacattcg                                                                                 <  2:446763‑M2/91‑12 (MQ=255)

          ttttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATgaatacattcg                                                                                 >  2:2774086‑M2/1‑80 (MQ=255)

          ttttCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGACATCGTACGAATGATgaatacattcg                                                                                 <  2:3420273‑M2/91‑12 (MQ=255)

                gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctc                                                                           <  1:2394391/91‑1 (MQ=255)

                gCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctc                                                                           >  1:2514924/1‑91 (MQ=255)

                 ttccTTTCAAATTGACACTTCGTAACGTTGAAGAAGTATTTTAAACGTATGTATTCGTTATCGTACGAATGATGAATATATTCTTctcttt                                                                          <  2:1389397/89‑3 (MQ=255)

                 cACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctct                                                                          >  2:2346438/1‑91 (MQ=255)

                 cACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctct                                                                          <  2:37361/91‑1 (MQ=255)

                   ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                                        >  1:3572736/1‑91 (MQ=255)

                   ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                                        <  2:30894/91‑1 (MQ=255)

                   ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                                        <  2:433799/91‑1 (MQ=255)

                   ccTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCctctct                                                                        <  2:2533036/91‑1 (MQ=255)

                     ttCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTa                                                                      >  1:3443654/1‑91 (MQ=255)

                     ttCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTa                                                                      <  1:286062/91‑1 (MQ=255)

                     ttCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTa                                                                      <  2:487610/91‑1 (MQ=255)

                     ttCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTa                                                                      <  1:2474111/91‑1 (MQ=255)

                      tgaaaaTTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAg                                                                     >  2:1345130/4‑91 (MQ=255)

                      tCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAg                                                                     >  1:1878572/1‑91 (MQ=255)

                        cAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGaa                                                                   >  2:1628892/1‑91 (MQ=255)

                         aaaTTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGaaa                                                                  >  1:2218958/1‑91 (MQ=255)

                         aaaTTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGaaa                                                                  >  2:2352103/1‑91 (MQ=255)

                           aTTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGaaaaa                                                                <  2:46411/91‑1 (MQ=255)

                            ttGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAAt                                                               <  1:2206792/91‑1 (MQ=255)

                            ttGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAAt                                                               <  1:3120994/91‑1 (MQ=255)

                            ttGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAAt                                                               <  1:1243699/91‑1 (MQ=255)

                             tGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATc                                                              >  2:2687863/1‑91 (MQ=255)

                             tGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATc                                                              >  2:907744/1‑91 (MQ=255)

                              gACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCt                                                             >  1:3916577/1‑91 (MQ=255)

                                cacCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGa                                                           >  2:3406257/1‑91 (MQ=255)

                                 acCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaa                                                          <  1:283324/91‑1 (MQ=255)

                                 acCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaa                                                          <  2:3570805/91‑1 (MQ=255)

                                  ccTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaac                                                         <  1:233648/91‑1 (MQ=255)

                                  ccTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaac                                                         <  1:9217/91‑1 (MQ=255)

                                  ccTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaaa                                                         >  1:1039799/1‑90 (MQ=255)

                                   cTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGaaca                                                        >  2:3069783/1‑91 (MQ=255)

                                      gTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAAcc                                                     >  1:2927182/1‑91 (MQ=255)

                                       tGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCt                                                    <  1:1215687/91‑1 (MQ=255)

                                         aCGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgt                                                  <  1:897714/91‑1 (MQ=255)

                                         aCGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgt                                                  <  1:803737/91‑1 (MQ=255)

                                         aCGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgt                                                  <  1:16091/91‑1 (MQ=255)

                                          cGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgtt                                                 <  1:3108940/91‑1 (MQ=255)

                                            ttGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCtgttgt                                               >  2:3144967/1‑91 (MQ=255)

                                               aagaagTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTgtcgt                                            >  2:615225/1‑91 (MQ=255)

                                                   agTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAAc                                        >  1:2972635/1‑91 (MQ=255)

                                                    gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                                       >  1:3203464/1‑91 (MQ=255)

                                                    gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                                       >  1:1938074/1‑91 (MQ=255)

                                                    gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                                       >  1:2029475/1‑91 (MQ=255)

                                                    gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                                       >  1:170869/1‑91 (MQ=255)

                                                    gTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACg                                       >  1:1458994/1‑91 (MQ=255)

                                                     tataTCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGt                                      <  1:638040/91‑1 (MQ=255)

                                                        atCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATc                                   <  2:2924501/91‑1 (MQ=255)

                                                         tCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCa                                  <  2:51186/91‑1 (MQ=255)

                                                         tCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCa                                  <  1:3769085/91‑1 (MQ=255)

                                                          cAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCaa                                 <  1:2716336/91‑1 (MQ=255)

                                                           aaaCGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAg                                >  2:2035985/1‑91 (MQ=255)

                                                             aCGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTg                              <  2:1988054/91‑1 (MQ=255)

                                                              cGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTgg                             <  2:1570384/91‑1 (MQ=255)

                                                                aaTGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGtt                           >  1:3835602/1‑91 (MQ=255)

                                                                 aTGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGttt                          <  2:2329108/91‑1 (MQ=255)

                                                                  tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         >  2:2284307/1‑91 (MQ=255)

                                                                  tGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTa                         <  1:2810939/91‑1 (MQ=255)

                                                                   gTATTCGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgac                        <  2:3222032‑M2/91‑69 (MQ=255)

                                                                   gTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAg                        <  1:63279/91‑1 (MQ=255)

                                                                   gTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAg                        <  2:814121/91‑1 (MQ=255)

                                                                    tATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAgg                       >  2:2558328/1‑91 (MQ=255)

                                                                    tATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTCTAgg                       >  2:1041568/1‑91 (MQ=255)

                                                                     aTTCGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgacca                      <  1:2851304‑M2/91‑71 (MQ=255)

                                                                     aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGt                      >  1:952147/1‑91 (MQ=255)

                                                                     aTTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTAGTTTAGGt                      <  2:132264/91‑1 (MQ=255)

                                                                      ttCGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccag                     <  2:2274496‑M2/91‑72 (MQ=255)

                                                                      ttCGGTATCGTACGAATGATGAATACATTCGTCCCTGTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGtt                     <  2:3900794/91‑1 (MQ=255)

                                                                      ttCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGtt                     >  2:1859169/1‑91 (MQ=255)

                                                                      ttCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGtt                     <  1:661147/91‑1 (MQ=255)

                                                                       tCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTc                    >  2:3530527/1‑91 (MQ=255)

                                                                        cGGTATCGTACGAATGATgaatacattcgtttgatatacttcttcaacgtcacgaggtgtcaatttggaaggtgctgaaaattgaccagat                   <  2:2099530‑M2/91‑74 (MQ=255)

                                                                        cGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCa                   >  2:2399916/1‑91 (MQ=255)

                                                                        cGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCa                   >  1:412728/1‑91 (MQ=255)

                                                                        cGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCa                   >  1:408585/1‑91 (MQ=255)

                                                                          gTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCAtt                 <  1:3254318/91‑1 (MQ=255)

                                                                           tATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCAttt                <  2:1525089/91‑1 (MQ=255)

                                                                            aTCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTg               >  2:1880585/1‑91 (MQ=255)

                                                                            aTCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTg               <  1:332118/91‑1 (MQ=255)

                                                                            aTCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGATTAGGTTCATTTg               >  2:672458/1‑91 (MQ=255)

                                                                              cGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGa             <  2:1119844/91‑1 (MQ=255)

                                                                              cGTACGAATAATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGa             >  1:1977810/1‑91 (MQ=255)

                                                                                 aCGAATGATGAATACATTCGTCCCTCTATTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATg          >  2:1483036/1‑91 (MQ=255)

                                                                                  cGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGTGTTAGGTTCATTTGGAATgg         >  1:2269589/1‑91 (MQ=255)

                                                                                  cGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATgg         >  2:2808780/1‑91 (MQ=255)

                                                                                  cGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATgg         <  1:3542479/91‑1 (MQ=255)

                                                                                   gAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGt        >  2:1766538/1‑91 (MQ=255)

                                                                                      tgatgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTAc     <  2:92109/91‑1 (MQ=255)

                                                                                       gatgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTTATTTGGAATGGTTACa    <  1:2629735/91‑1 (MQ=255)

                                                                                         tgaATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACaaa  >  2:2471337/1‑91 (MQ=255)

ATCTGGTCAATTTTCAGCACCTTCCAAATTGACACCTCGTGACGTTGAAGAAGTATATCAAACGAATGTATTCGGTATCGTACGAATGATGAATACATTCGTCCCTCTCTTAGAAAAATCTGAACAACCTGTTGTCGTCAACGTATCAAGTGGTTTAGGTTCATTTGGAATGGTTACAAA  >  USA300TCH1516_ALE/2719308‑2719487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.