| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2740979 | 120 (0.590) | 30 (0.180) | 15/132 | NT | 22.1% | intergenic (+21/+60) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase |
| ? | USA300TCH1516_ALE | = 2741001 | 113 (0.670) | intergenic (+43/+38) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase | |||||
ATTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2740875‑2740979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaatcatttccACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC < USA300TCH1516_ALE/2741001‑2740912 ATTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAG‑AAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAA < 1:161961/91‑1 TTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAA > 2:1931852/1‑91 TTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAA > 2:1339889/1‑91 GTTGGTATCATCCTATATTTAAGTTATGGACTTAGAAATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAA < 2:1460773/91‑1 TTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAA > 2:2066251/1‑91 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA > 2:492347/1‑91 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA > 1:137701/1‑91 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA > 2:2207391/1‑91 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA < 1:1101109/91‑1 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA < 1:3574506/91‑1 GGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA < 1:248407/91‑1 GGTATCATCCTATATGTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA < 2:3877711/91‑1 TATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATC < 1:903727/91‑1 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCA < 2:1310558/91‑1 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCA < 1:2215219/91‑1 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAA‑AAAAAAAATCA < 2:3126934/91‑1 ATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCAACAAAAAAAAAAAT‑AAAAAAAATCA < 2:2965754/91‑1 cCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAA‑AAAAAAAATCAT < 2:2510440/90‑1 TCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCAT > 1:2530898/1‑91 TCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCAT > 2:1866084/1‑91 TCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCAT > 2:700351/1‑91 CATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATT < 1:2074928/91‑1 CATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATT < 2:1744722/91‑1 CATCCTATATTTAAGTAATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAACATAAAATAT‑AAAAAAAAACATT > 2:1194405/1‑91 ATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTT > 1:2806850/1‑91 TCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTC > 1:1046802/1‑91 TCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTC > 2:214699/1‑91 TCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTC > 1:800940/1‑91 TCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTC > 1:800324/1‑91 TCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTC < 2:3760804/91‑1 CCTATATTTAAGTTCTGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC > 2:3521665/1‑91 CCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC < 2:764464/91‑1 CCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC < 1:132002/91‑1 TTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCT < 1:3089017/91‑1 ACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCA < 2:354955/91‑1 AGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATG < 2:2113926/91‑1 AGACATTCTAAAAAAAATGACGTAGCTGAATACCACCCACAAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATG < 2:201001/91‑1 GACATTCAAAGAAAAATGACGTAGCTGAATACCACCCACCAAAAAAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGG < 2:302161/91‑1 ACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGG < 1:753055/91‑1 ACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGG < 1:151069/91‑1 ACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGG < 1:1205482/91‑1 ATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAA < 1:2772743/91‑1 TTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAA < 2:1967051/91‑1 TTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAA < 2:992927/91‑1 TTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAA < 1:537324/91‑1 TTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAA < 1:1179018/91‑1 TTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAA < 1:3575217/91‑1 TTCTAAGAAAAATGAAGTAGCTGAATAACACCAATCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAA < 2:2356255/91‑1 gaTAAGAAAAATGACGGGGCGAAATATCACCAACAAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAAT < 2:3484146/89‑1 TCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAAT < 2:3133138/91‑1 TCTAAGAAAAATGACGTAGCTGAATACCACCAACAAAAATAAAAAATAAAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAA < 2:2338577/91‑1 TAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGA < 1:1107348/91‑1 TAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGA < 1:1521230/91‑1 GAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTT < 2:714476/91‑1 AATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTT < 2:1511658/91‑1 ATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTAT < 1:525966/91‑1 ATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTAT < 1:525922/91‑1 ATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTAT < 1:526400/91‑1 TGACGTAGCTGAATACCACCCACCAAAANAAAANAT‑AAAAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTA < 1:1107425/91‑1 GACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAATTCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTAT < 1:161916/91‑1 GACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCCTCATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTAT < 2:152385/91‑1 CGTAGCTGAATACCACCCACCAAAATAAAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTT < 1:444198/91‑1 TAGCTGAATACCACCCACCAAAATATAAAAT‑‑‑AAAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTA < 1:1023136/91‑1 AAAAAATCAATTCCTGATCTGGATGTTAAACAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATACAGCTACGTCATTT < 2:2895925/91‑1 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTTGTATTCAGCTACGTCATTTT < 2:538132/91‑1 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTT < 2:502884/91‑1 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTT < 2:1999840/91‑1 AAAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTT > 2:3169233/1‑91 AAAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTT > 1:2473051/1‑91 AAATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTC > 1:220864/1‑91 AATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCT < 2:3947141/91‑1 ATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTT > 1:377537/1‑91 ATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTT < 1:351215/91‑1 ATCATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGCCCTTTCTCTT > 2:1660314/1‑91 CATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAG < 2:2118500/91‑1 CATTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAG < 1:2964270/91‑1 TTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAA < 2:355978/91‑1 TTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAA > 1:211488/1‑91 TTTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAA < 2:687271/91‑1 TTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTTGGTGGTATTTAGCTACGTCATTTTTCTTATAAT > 2:1758431/1‑91 TTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAAT < 2:906938/91‑1 TTCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAAT < 2:209512/91‑1 TCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTTTTTGGTGTTATTCAGCTACTTCATTTTTCTTATAATt > 2:666516/1‑90 TCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATG > 1:658479/1‑91 TCCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATG > 1:2615137/1‑91 CCACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGT < 2:1900845/91‑1 CACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC > 2:1669694/1‑91 CACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC > 1:3460915/1‑91 ATTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAATCATTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2740875‑2740979‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaatcatttccACATCTGGATGTTAATCAGATGGGAAATGATTTTTTTTATTTTTTATTTTGGTGGGTGGTATTCAGCTACGTCATTTTTCTTAGAATGTC < USA300TCH1516_ALE/2741001‑2740912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |