| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2751374 | 149 (0.730) | 14 (0.080) | 7/146 | NT | 9.4% | intergenic (‑222/+39) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase |
| ? | USA300TCH1516_ALE | = 2751393 | 134 (0.720) | intergenic (‑241/+20) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase | |||||
TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2751280‑2751374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < USA300TCH1516_ALE/2751393‑2751304 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 1:1583560/1‑91TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 2:1246511/1‑91TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTG > 2:2038136/1‑91 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA < 1:522132/91‑1 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA < 1:522143/91‑1 GTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGA < 2:323378/91‑1 TTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAG > 1:1354672/1‑91 TACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGT < 2:3377991/91‑1 ACTAACAGTAATGAAATAATCTATGATTCTTTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATTCTTTACAAAGTGAGTG < 2:3523637/91‑1 TAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACA < 2:1978664/91‑1 AATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAA < 1:1947577/91‑1 AATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAA < 2:2517153/91‑1 AATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAA < 2:2354603/91‑1 AATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAA < 1:1947568/91‑1 AATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAA < 1:1862751/91‑1 TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGA < 1:1203938/91‑1 TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACAATTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGA < 2:766412/91‑1 CTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGAC < 2:2738721/91‑1 ATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACAC < 1:3940867/91‑1 TGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACT < 1:1721431/91‑1 ATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAGAGTGAGTGCCATTGTAAGAACACAAGACACTCA < 1:3800805/91‑1 ATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACTCA < 1:698275/91‑1 ATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGCCATTGTAAGAACACAAGACACTCA < 1:997217/91‑1 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 1:2258767/1‑91 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 1:809765/1‑91 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 1:2005824/1‑91 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 2:3751616/1‑91 GTGAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAA > 1:809750/1‑91 GAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATC > 2:1371226/1‑91 GAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATC > 2:1371412/1‑91 GAGTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATC > 1:2931572/1‑91 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT < 2:2840474/91‑1 GTGCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCAT > 1:1986275/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAACTGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 1:3428430/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAACTGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 1:3420151/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 2:2010389/91‑1 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG > 1:2066194/1‑91 GCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < 2:3311106/91‑1 TGTTACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2751280‑2751374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgCCATTGTAAGAACACAAGACACTCACTTTGTTTTGTATAAGTGGCGAAATGTTGATTGATAATTTGGACTAAACGCAAAATGAATCATAG < USA300TCH1516_ALE/2751393‑2751304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |