BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2751374	149 (0.730)	14 (0.080)	7/146	NT	9.4%	intergenic (‑222/+39)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase
*	?	USA300TCH1516_ALE	= 2751393	134 (0.720)	14 (0.080)	7/146	NT	9.4%	intergenic (‑241/+20)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase

Only 100 of 220 total aligned reads displayed.

ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGT  >  USA300TCH1516_ALE/2751284‑2751464

aCTAACAGTAATGAAATAATCTATGATTCTTTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATTCTTTACAAAGTGAGTG                                                                                            <  2:3523637‑M1/91‑1 (MQ=255)

 cTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAgtgt                                                                                           <  2:3370648/91‑1 (MQ=255)

   aaCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCt                                                                                         <  2:2974857/91‑1 (MQ=255)

    aCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCtt                                                                                        <  1:2643017/91‑1 (MQ=255)

    aCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCtt                                                                                        <  1:1556090/91‑1 (MQ=255)

      aGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgt                                                                                      <  2:1138665/91‑1 (MQ=255)

       gTAATGACATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgtg                                                                                     <  2:3513749/91‑1 (MQ=255)

       gTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgtg                                                                                     <  1:1022658/91‑1 (MQ=255)

       gTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgtg                                                                                     <  2:1503268/91‑1 (MQ=255)

       gTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgtg                                                                                     <  2:2207836/91‑1 (MQ=255)

       gTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgtg                                                                                     >  2:486026/1‑91 (MQ=255)

        tAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTgtgt                                                                                    <  1:1306292/91‑1 (MQ=255)

         aaTGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGtt                                                                                   <  2:3695212/91‑1 (MQ=255)

         aaTGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGtt                                                                                   >  1:141113/1‑91 (MQ=255)

          aTGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTc                                                                                  <  1:3747431/91‑1 (MQ=255)

             aaaTAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTa                                                                               >  2:1977079/1‑91 (MQ=255)

               ataatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACa                                                                             >  2:2440057/1‑91 (MQ=255)

               ataatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAACCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACa                                                                             >  2:3252272/1‑91 (MQ=255)

                taatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacaca                                                                            <  2:1978664‑M1/91‑17 (MQ=255)

                 aatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaa                                                                           <  1:1947577‑M1/91‑18 (MQ=255)

                 aatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaa                                                                           <  2:2354603‑M1/91‑18 (MQ=255)

                 aatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaa                                                                           <  1:1862751‑M1/91‑18 (MQ=255)

                  atCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATg                                                                          <  2:3220909/91‑1 (MQ=255)

                  atCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATg                                                                          >  1:1946356/1‑91 (MQ=255)

                   tCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaaga                                                                         <  1:1203938‑M1/91‑20 (MQ=255)

                   tCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATgg                                                                         >  1:1001886/1‑91 (MQ=255)

                   tCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACAATTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaaga                                                                         <  2:766412‑M1/91‑20 (MQ=255)

                    cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGc                                                                        <  2:2010389‑M2/91‑2 (MQ=255)

                    cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACAGTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGc                                                                        <  1:3420151‑M2/91‑2 (MQ=255)

                      aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagacac                                                                      <  1:3940867‑M1/91‑23 (MQ=255)

                      aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                      >  1:1986275‑M2/1‑88 (MQ=255)

                      aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                      <  2:2840474‑M2/91‑4 (MQ=255)

                         aTTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagacactca                                                                   <  1:997217‑M1/91‑26 (MQ=255)

                          ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                  >  2:3751616‑M2/1‑84 (MQ=255)

                          ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                  >  1:809750‑M2/1‑84 (MQ=255)

                          ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                  >  1:2258767‑M2/1‑84 (MQ=255)

                          ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                  >  1:2005824‑M2/1‑84 (MQ=255)

                           tCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCAcc                                                                 >  2:2571889/1‑91 (MQ=255)

                           tCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCAcc                                                                 <  1:1709761/91‑1 (MQ=255)

                              ttttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTa                                                              >  1:1340036/1‑91 (MQ=255)

                                ttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATc                                                            <  2:2303511/91‑1 (MQ=255)

                                ttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATc                                                            <  1:2193821/91‑1 (MQ=255)

                                        aGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttttt                                                    <  1:3570714/91‑1 (MQ=255)

                                         gTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTa                                                   <  1:2252437/91‑1 (MQ=255)

                                         gTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTa                                                   <  1:427594/91‑1 (MQ=255)

                                          tCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAt                                                  <  2:1089042/91‑1 (MQ=255)

                                              aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                              >  2:682710/1‑91 (MQ=255)

                                              aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                              >  2:3610679/1‑91 (MQ=255)

                                                  atcaatcaACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaaa                                          >  2:2722133/1‑91 (MQ=255)

                                                   tcaatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAc                                         <  1:3230010/91‑1 (MQ=255)

                                                    caatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAcc                                        >  2:903145/1‑91 (MQ=255)

                                                      atcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCaa                                      >  1:1055389/1‑91 (MQ=255)

                                                      atcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCaa                                      >  1:1760900/1‑91 (MQ=255)

                                                       tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                     >  1:2717008/1‑91 (MQ=255)

                                                       tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                     <  1:1605590/91‑1 (MQ=255)

                                                        caaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAtt                                    >  1:212836/1‑91 (MQ=255)

                                                        caaCATTGCGCGACTTATGCAAAACAAAGTGAGTGTTTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTGTATTTGCTAAACCaaat                                    <  2:3907601/91‑3 (MQ=255)

                                                         aaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTc                                   <  1:3179336/91‑1 (MQ=255)

                                                         aaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTc                                   >  1:3516537/1‑91 (MQ=255)

                                                         aaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTc                                   <  1:449730/91‑1 (MQ=255)

                                                          aCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCa                                  >  2:2101521/1‑91 (MQ=255)

                                                           cATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCAc                                 <  1:2904190/91‑1 (MQ=255)

                                                              ttCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTaa                              >  2:563811/1‑91 (MQ=255)

                                                               tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                             >  1:2442382/1‑91 (MQ=255)

                                                               tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                             >  2:1715018/1‑91 (MQ=255)

                                                               tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                             <  1:1118010/91‑1 (MQ=255)

                                                                  ccACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgt                          >  2:3030579/1‑91 (MQ=255)

                                                                   cACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                         <  2:2692894/91‑1 (MQ=255)

                                                                   cACCTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                         >  1:1660192/1‑91 (MQ=255)

                                                                     cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                       <  2:1569049/91‑1 (MQ=255)

                                                                     cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                       <  2:3487595/91‑1 (MQ=255)

                                                                     cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                       <  1:1988106/91‑1 (MQ=255)

                                                                       tataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatt                     <  1:1998709/91‑1 (MQ=255)

                                                                       tataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatt                     <  2:106611/91‑1 (MQ=255)

                                                                         taCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttg                   <  1:148129/91‑1 (MQ=255)

                                                                          acaaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgt                  >  2:1443430/1‑91 (MQ=255)

                                                                           caaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgta                 <  1:689658/91‑1 (MQ=255)

                                                                           caaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgta                 >  1:1617285/1‑91 (MQ=255)

                                                                             aaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatt               <  1:2747303/91‑1 (MQ=255)

                                                                               acaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatttg             >  1:2529776/1‑91 (MQ=255)

                                                                               acaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatttg             >  1:480442/1‑91 (MQ=255)

                                                                                 aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGtt           >  2:2825948/1‑91 (MQ=255)

                                                                                  aaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTa          >  1:3065357/1‑91 (MQ=255)

                                                                                   agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa         <  2:3617385/91‑1 (MQ=255)

                                                                                    gtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaa        <  2:3561034/91‑1 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaat       <  1:698275‑M2/91‑67 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGcactcactctgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaat       <  1:3800805‑M2/91‑67 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       <  1:3544006/91‑1 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       >  2:3032006/1‑91 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       <  1:805993/91‑1 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       >  1:1108175/1‑91 (MQ=255)

                                                                                      gagtgccattgtaagaacacaagacactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatc      >  2:1371226‑M1/1‑5 (MQ=255)

                                                                                      gagtgccattgtaagaacacaagacactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatc      >  2:1371412‑M1/1‑5 (MQ=255)

                                                                                      gagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAt      >  1:854819/1‑91 (MQ=255)

                                                                                       agtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatca     <  1:1721431‑M2/91‑69 (MQ=255)

                                                                                       agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg     <  1:2939826/91‑1 (MQ=255)

                                                                                       agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg     <  1:3477972/91‑1 (MQ=255)

                                                                                       agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg     >  1:620223/1‑91 (MQ=255)

                                                                                          gtCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatag  <  2:2738721‑M2/91‑72 (MQ=255)

                                                                                          gccattgtaagaacacaagacactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatag  >  1:2066194‑M1/1‑1 (MQ=255)

ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGT  >  USA300TCH1516_ALE/2751284‑2751464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.