BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2751374	149 (0.730)	14 (0.080)	7/146	NT	9.4%	intergenic (‑222/+39)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase
*	?	USA300TCH1516_ALE	= 2751393	134 (0.720)	14 (0.080)	7/146	NT	9.4%	intergenic (‑241/+20)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase

Only 100 of 188 total aligned reads displayed.

TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACTCTT  >  USA300TCH1516_ALE/2751303‑2751483

tCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATgg                                                                                            >  1:1001886/1‑91 (MQ=255)

tCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATgg                                                                                            <  1:47048/91‑1 (MQ=255)

 cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACAGTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGc                                                                                           <  1:3420151‑M2/91‑2 (MQ=255)

   aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                                         >  1:1986275‑M2/1‑88 (MQ=255)

   aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                                         <  2:2840474‑M2/91‑4 (MQ=255)

     gATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactc                                                                                       >  1:2931572‑M2/1‑86 (MQ=255)

     gATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactc                                                                                       >  2:1371412‑M2/1‑86 (MQ=255)

       ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                                     >  2:3751616‑M2/1‑84 (MQ=255)

       ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                                     >  1:2005824‑M2/1‑84 (MQ=255)

       ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                                     >  1:2258767‑M2/1‑84 (MQ=255)

       ttCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcac                                                                                     >  1:809765‑M2/1‑84 (MQ=255)

        tCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCAcc                                                                                    >  2:2571889/1‑91 (MQ=255)

          aTTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCtt                                                                                  <  1:605277/91‑1 (MQ=255)

          aTTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCtt                                                                                  <  2:1473424/91‑1 (MQ=255)

           ttttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTa                                                                                 >  1:1340036/1‑91 (MQ=255)

            tttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTAt                                                                                <  1:1623237/91‑1 (MQ=255)

             ttGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATc                                                                               <  1:2193821/91‑1 (MQ=255)

              tGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCt                                                                              <  2:3563713/91‑1 (MQ=255)

               gCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                                             <  1:1757061/91‑1 (MQ=255)

               gCGTTCAGTCCAAATTATCAATCAACATTTCGCCACTTAGACAAAACAAAGTGGGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                                             <  1:3680480/91‑1 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTaa                                                                            >  1:1130339/1‑91 (MQ=255)

                cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTaa                                                                            >  2:29856/1‑91 (MQ=255)

                 gTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAt                                                                           <  1:2233914/91‑1 (MQ=255)

                  tttAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTCAtt                                                                          >  1:3557613/1‑91 (MQ=255)

                  tttAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAtt                                                                          <  2:1904357/91‑1 (MQ=255)

                   ttAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttt                                                                         <  1:439288/91‑1 (MQ=255)

                      gTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTa                                                                      <  1:427594/91‑1 (MQ=255)

                      gTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTGATCTAATTTTTa                                                                      <  1:3027763/91‑1 (MQ=255)

                       tCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAt                                                                     <  2:1089042/91‑1 (MQ=255)

                       tCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAt                                                                     <  1:1421040/91‑1 (MQ=255)

                           aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                                                 >  2:3610679/1‑91 (MQ=255)

                           aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                                                 >  2:682710/1‑91 (MQ=255)

                               atcaatcaACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaaa                                                             >  2:2722133/1‑91 (MQ=255)

                                 caatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAcc                                                           >  2:903145/1‑91 (MQ=255)

                                   atcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCaa                                                         >  1:1055389/1‑91 (MQ=255)

                                    tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                                        <  1:946040/91‑1 (MQ=255)

                                    tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                                        >  1:2717008/1‑91 (MQ=255)

                                    tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                                        <  1:1605614/91‑1 (MQ=255)

                                     caaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAtt                                                       >  1:212836/1‑91 (MQ=255)

                                      aaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTc                                                      >  1:3516851/1‑91 (MQ=255)

                                      aaCATTTCGCCACTTATAC‑AAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCa                                                     <  2:3941170/91‑1 (MQ=255)

                                       aCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCa                                                     >  2:2101521/1‑91 (MQ=255)

                                       aCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCa                                                     >  1:3821296/1‑91 (MQ=255)

                                          tttCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTa                                                  <  2:2637992/91‑1 (MQ=255)

                                           ttCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTaa                                                 >  2:563811/1‑91 (MQ=255)

                                           ttCACCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTaa                                                 <  1:3181898/91‑1 (MQ=255)

                                            tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                                                <  1:1118010/91‑1 (MQ=255)

                                            tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                                                >  2:2193397/1‑91 (MQ=255)

                                               ccACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgt                                             >  2:3030579/1‑91 (MQ=255)

                                                cACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATtgtg                                            <  2:2295734/91‑1 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                                          <  2:3487595/91‑1 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                                          <  1:1988106/91‑1 (MQ=255)

                                                  cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                                          <  2:1569049/91‑1 (MQ=255)

                                                   ttATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGat                                         <  1:2768808/91‑1 (MQ=255)

                                                    tataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatt                                        <  2:132125/91‑1 (MQ=255)

                                                     ataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGattt                                       <  1:1008633/91‑1 (MQ=255)

                                                     ataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGattt                                       >  2:3531001/1‑91 (MQ=255)

                                                      taCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttg                                      <  1:148129/91‑1 (MQ=255)

                                                        caaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgta                                    >  1:3132862/1‑91 (MQ=255)

                                                        caaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgta                                    >  2:2369012/1‑91 (MQ=255)

                                                        caaaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgta                                    <  1:689579/91‑1 (MQ=255)

                                                          aaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatt                                  <  1:2747303/91‑1 (MQ=255)

                                                            acaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatttg                                >  1:2495853/1‑91 (MQ=255)

                                                            acaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatttg                                >  1:480442/1‑91 (MQ=255)

                                                              aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGtt                              >  1:2359767/1‑91 (MQ=255)

                                                              aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGtt                              >  1:1704955/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            >  1:1714461/1‑91 (MQ=255)

                                                                agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa                            <  2:3617385/91‑1 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaat                          <  1:997217‑M2/91‑67 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaat                          <  1:698275‑M2/91‑67 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          <  1:805993/91‑1 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          >  1:1108175/1‑91 (MQ=255)

                                                                  tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa                          >  2:3032006/1‑91 (MQ=255)

                                                                    agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg                        <  1:3477972/91‑1 (MQ=255)

                                                                     gtgtCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtgt                       >  1:1574325/1‑91 (MQ=255)

                                                                       gtCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATgtgt                     >  1:1770020/1‑91 (MQ=255)

                                                                        tCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaattgttgattgataatttggactaaacgcaaaatgaatcataga                    <  2:766412‑M2/91‑73 (MQ=255)

                                                                        tCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcataga                    <  1:1203938‑M2/91‑73 (MQ=255)

                                                                        tCTTGTGTTCTTACAATGGCACTCACCTTCTCTAATTTTTATTTCCTAAACCCATTCACTACTTCTGGATTTGTATTCGTTAAAAcgtgct                    >  2:3613352/1‑89 (MQ=255)

                                                                         cTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGttt                   <  1:479410/91‑1 (MQ=255)

                                                                          ttGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatagatt                  <  1:1862751‑M2/91‑75 (MQ=255)

                                                                          ttGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatagatt                  <  1:1947577‑M2/91‑75 (MQ=255)

                                                                          ttGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatagatt                  <  2:2354603‑M2/91‑75 (MQ=255)

                                                                           tgtgTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatagatta                 <  2:1978664‑M2/91‑76 (MQ=255)

                                                                            gtgtTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGa                <  2:3216925/91‑1 (MQ=255)

                                                                             tgtTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGaa               <  2:864797/91‑1 (MQ=255)

                                                                             tgtTCTTACAATGCCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGaa               <  2:1198807/91‑1 (MQ=255)

                                                                               ttCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAAc             >  1:2077241/1‑91 (MQ=255)

                                                                                tCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACa            <  2:2674891/91‑1 (MQ=255)

                                                                                 cTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACaa           >  1:1941495/1‑91 (MQ=255)

                                                                                  ttACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAg          <  2:1162399/91‑1 (MQ=255)

                                                                                   tACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAgg         <  2:1213120/91‑1 (MQ=255)

                                                                                      aaTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAc      >  2:1686176/1‑91 (MQ=255)

                                                                                       aTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAct     >  2:2793263/1‑91 (MQ=255)

                                                                                       aTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAct     <  1:3643827/91‑1 (MQ=255)

                                                                                       aTGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTAct     >  2:1827588/1‑91 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActc    >  1:3783085/1‑91 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActc    >  1:2589729/1‑91 (MQ=255)

                                                                                        tGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTActc    <  1:257021/91‑1 (MQ=255)

                                                                                          gCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACtctt  >  1:353501/1‑91 (MQ=255)

TCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGTTTTGAAACAAGGTACTCTT  >  USA300TCH1516_ALE/2751303‑2751483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.