| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2772627 | 176 (0.860) | 19 (0.100) | 13/152 | NT | 11.7% | intergenic (+1/+59) | phoB/USA300TCH1516_02632 | Alkaline phosphatase 3/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2772679 | 120 (0.620) | intergenic (+53/+7) | phoB/USA300TCH1516_02632 | Alkaline phosphatase 3/hypothetical protein | |||||
AATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2772534‑2772627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaCCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCT < USA300TCH1516_ALE/2772679‑2772590 AATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGT > 2:560668/1‑91AATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGT < 1:3272721/91‑1AATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTAGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGT < 1:3314874/91‑1 ATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTA < 1:1884273/91‑1 ACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAA > 1:3381454/1‑91 ACCTACGCTTACGGACCTAGATCAGAATCATTCAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTAAAGTAAA > 2:3221318/1‑91 CATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTA < 1:110331/91‑1 ATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACGCCTTGTTAT < 2:1488396/91‑1 TTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTAT < 2:1499402/91‑1 TTTAGTGGTAATATCGAAAATACAGAAAGCGAAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTAT < 2:2586285/91‑1 TTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATA < 2:3765640/91‑1 TTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATA < 2:3276022/91‑1 TTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATA < 1:192266/91‑1 TAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATAG < 1:645148/91‑1 AGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATAGT < 2:1134304/91‑1 GTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGC < 1:1076146/91‑1 GGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTC < 1:2222746/91‑1 TAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATAGTGCTCG < 1:620879/91‑1 TAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATAGTGCTCG < 1:620891/91‑1 TAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAACACCTTGTTATAGTGCTCG < 1:33435/91‑1 GAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTT < 1:1450807/91‑1 AATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTT < 1:107079/91‑1 ATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTA < 2:1194564/91‑1 GCGCAAAAATAATATTTGATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACT < 1:3653120/91‑1 GATATATTCAAGTAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATT < 1:2261395/91‑1 TAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTT > 1:779837/1‑91 TAAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTCTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTT > 1:780078/1‑91 AAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTT > 1:859217/1‑91 AAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTT < 2:2770758/91‑1 AAACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTCTGCGCTTT > 1:1636474/1‑91 AACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTC < 2:137674/91‑1 AACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTC < 1:1531968/91‑1 AACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTC < 2:3843091/91‑1 ACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCT > 2:3622368/1‑91 ACCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCT > 2:564424/1‑91 AATACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2772534‑2772627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaCCAT‑AAAAAATTCCCGAACACCTTGTTATAGTGCTCGGGAATTTTTTTATGCTTTACTTGAATATATCAAATATTATTTTTGCGCTTTCT < USA300TCH1516_ALE/2772679‑2772590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |