BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2772627	176 (0.860)	19 (0.100)	13/152	NT	11.7%	intergenic (+1/+59)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein
*	?	USA300TCH1516_ALE	= 2772679	120 (0.620)	19 (0.100)	13/152	NT	11.7%	intergenic (+53/+7)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein

Only 100 of 243 total aligned reads displayed.

ACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACAC  >  USA300TCH1516_ALE/2772537‑2772717

      gCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaa                                                                                      <  1:600713/91‑1 (MQ=255)

      gCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaa                                                                                      >  2:625406/1‑91 (MQ=255)

       cTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaa                                                                                     <  2:2184025/91‑1 (MQ=255)

       cTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaa                                                                                     >  1:1746504/1‑91 (MQ=255)

       cTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaa                                                                                     >  1:2726742/1‑91 (MQ=255)

        ttACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaa                                                                                    >  1:2768646/1‑91 (MQ=255)

        ttACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaa                                                                                    <  1:3479787/91‑1 (MQ=255)

          aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                  >  1:881296/1‑91 (MQ=255)

          aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                  >  2:313410/1‑91 (MQ=255)

          aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                  <  1:2051078/91‑1 (MQ=255)

          aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                  <  1:2534751/91‑1 (MQ=255)

          aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                  <  1:2798348/91‑1 (MQ=255)

           cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                 >  2:3458267/1‑91 (MQ=255)

            ggACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAAt                                                                                >  2:1987210/1‑91 (MQ=255)

             gACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAAtt                                                                               <  1:1603760/91‑1 (MQ=255)

              aCCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTc                                                                              <  2:1331397/91‑1 (MQ=255)

               ccTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTcc                                                                             <  2:3912022/91‑1 (MQ=255)

               acTAGATGCGAATCAATTAGTGGTACTATCGAAAATACAGAAAGAGAAAAAATAATATTTGACATATTCAAGTAAAGCATAAAAAAAATcc                                                                             >  2:3824484/2‑91 (MQ=255)

                   gATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAg                                                                         <  1:1451444/91‑1 (MQ=255)

                     tCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCa                                                                       >  2:1419686/1‑91 (MQ=255)

                     tCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCa                                                                       >  2:2886493/1‑91 (MQ=255)

                      cAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCAc                                                                      <  2:1797124/91‑1 (MQ=255)

                       aGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACt                                                                     >  1:1297370/1‑91 (MQ=255)

                        gAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACta                                                                    <  2:1548342/91‑1 (MQ=255)

                         aaTCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACtat                                                                   <  1:2013816/91‑1 (MQ=255)

                         aaTCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACtat                                                                   >  1:1904726/1‑91 (MQ=255)

                          aTCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACtata                                                                  >  2:2717517/1‑91 (MQ=255)

                          aTCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACtata                                                                  >  1:2440720/1‑91 (MQ=255)

                            cATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAAc                                                                <  1:952882/91‑1 (MQ=255)

                             aTTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAccataaaaaattcccgaacgccttgttat                                                               <  2:1488396‑M1/91‑30 (MQ=255)

                             aTTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACa                                                               <  1:683960/91‑1 (MQ=255)

                             aTTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACa                                                               >  2:829259/1‑91 (MQ=255)

                             aTTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACa                                                               <  2:3384923/91‑1 (MQ=255)

                             aTTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACa                                                               >  1:1189538/1‑91 (MQ=255)

                               ttAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAgcataaaaaaattcccgaacaccttgttata                                                             <  2:3765640‑M1/91‑32 (MQ=255)

                                tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAgg                                                            >  2:1975976/1‑91 (MQ=255)

                                tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAgg                                                            >  2:430906/1‑91 (MQ=255)

                                tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAgg                                                            >  2:431067/1‑91 (MQ=255)

                                tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATACTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAgg                                                            >  2:3248747/1‑91 (MQ=255)

                                 aGTGGTAATGTCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGgt                                                           <  1:3786016/91‑1 (MQ=255)

                                 aGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGgt                                                           <  1:2782048/91‑1 (MQ=255)

                                  gTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAccataaaaaattcccgaacaccttgttatagtgc                                                          <  1:1076146‑M1/91‑35 (MQ=255)

                                  gTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGgtg                                                          >  1:153019/1‑91 (MQ=255)

                                   tGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGgtgt                                                         <  1:2946923/91‑1 (MQ=255)

                                   tGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGgtgt                                                         <  1:3735478/91‑1 (MQ=255)

                                      tAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAgcataaaaaaattcccgaacaccttgttatagtgctcg                                                      <  1:33435‑M1/91‑39 (MQ=255)

                                      tAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCg                                                      >  1:232199/1‑91 (MQ=255)

                                       aaTATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCgg                                                     <  1:1233300/91‑1 (MQ=255)

                                          atCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGaa                                                  <  2:2726742/91‑1 (MQ=255)

                                           tCGAAAATACAGAAAGCGCAAAAATAATATTTTATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAAt                                                 <  1:3373021/91‑1 (MQ=255)

                                           tCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAAt                                                 >  2:2974892/1‑91 (MQ=255)

                                            cGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAAtt                                                >  2:2990744/1‑91 (MQ=255)

                                             gAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAAttt                                               <  1:329702/91‑1 (MQ=255)

                                             gAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAAttt                                               >  2:1261601/1‑91 (MQ=255)

                                                aaTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAAtttttt                                            >  2:2057671/1‑91 (MQ=255)

                                                aaTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAACTCCCGAGCACTATAACAAGGTGTTCGGGAAtttttt                                            >  2:3569698/1‑91 (MQ=255)

                                                 aTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAccataaaaaattcccgaacaccttgttatagtgctcgggaattttttta                                           <  2:1194564‑M1/91‑50 (MQ=255)

                                                 aTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTa                                           <  2:3719801/91‑1 (MQ=255)

                                                    cAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATgg                                        >  1:319374/1‑91 (MQ=255)

                                                      gAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGtt                                      <  1:1531968‑M2/91‑3 (MQ=255)

                                                      gAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGtt                                      <  2:3843091‑M2/91‑3 (MQ=255)

                                                       aaaGCGCAGAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGttt                                     >  1:1636474‑M2/1‑88 (MQ=255)

                                                          gcgcAAAAATAATATTTGATATATTCAAGTAAAccataaaaaattcccgaacaccttgttatagtgctcgggaatttttttatgctttact                                  <  1:3653120‑M1/91‑59 (MQ=255)

                                                            gcAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAAttt                                <  1:3445596/91‑1 (MQ=255)

                                                            gcAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAAttt                                <  2:538818/91‑1 (MQ=255)

                                                              aaaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAg                              >  1:3635227/1‑91 (MQ=255)

                                                               aaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGt                             >  1:1379220/1‑91 (MQ=255)

                                                                aaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTa                            >  2:2076018/1‑91 (MQ=255)

                                                                 aataatATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTAc                           <  1:4535/91‑1 (MQ=255)

                                                                   taataTTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTc                         <  1:110050/91‑1 (MQ=255)

                                                                    aataTTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTGCTCa                        >  1:2690475/1‑91 (MQ=255)

                                                                    aataTTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCa                        >  1:1035906/1‑91 (MQ=255)

                                                                       atTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATg                     >  2:1022324/1‑91 (MQ=255)

                                                                       atTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATg                     >  1:1574207/1‑91 (MQ=255)

                                                                         ttGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGtt                   >  1:927343/1‑91 (MQ=255)

                                                                         ttGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACGATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGtt                   <  2:252928/91‑1 (MQ=255)

                                                                         ttGATATATTCAAGTAAAGCATAAAAAAATTCCAGAGTACTATAACCAGGTGTTCGGGATTTTTTTATGGTTTAATTTAGTACTCAATGtt                   >  1:3155124/1‑91 (MQ=255)

                                                                          tGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTa                  <  1:3069245/91‑1 (MQ=255)

                                                                           gATATATTCAAGTAAAccataaaaaattcccgaacaccttgttatagtgctcgggaatttttttatgctttacttgaatatatcaaatatt                 <  1:2261395‑M1/91‑76 (MQ=255)

                                                                              atatTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGATCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTg              >  2:1389025/1‑91 (MQ=255)

                                                                                atTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCt            <  1:390142/91‑1 (MQ=255)

                                                                                atTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCt            <  2:1642359/91‑1 (MQ=255)

                                                                                     aGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt       <  2:2675378/91‑1 (MQ=255)

                                                                                     aGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt       >  2:2373433/1‑91 (MQ=255)

                                                                                     aGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt       >  1:222947/1‑91 (MQ=255)

                                                                                      gTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTa      <  1:1929482/91‑1 (MQ=255)

                                                                                       tAAAccataaaaaattcccgaacaccttgttatagtgctcgggaatttttttatgctttacttgaatatatcaaatattatttttgcgctt     >  1:779837‑M1/1‑4 (MQ=255)

                                                                                       tAAAccataaaaaattcccgaacaccttgttatagtgctcgggaatttctttatgctttacttgaatatatcaaatattatttttgcgctt     >  1:780078‑M1/1‑4 (MQ=255)

                                                                                       tAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTaa     >  1:2097323/1‑91 (MQ=255)

                                                                                       tAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTaa     >  1:2343685/1‑91 (MQ=255)

                                                                                        aaaccataaaaaattcccgaacaccttgttatagtgctcgggaatttttttatgctttacttgaatatatcaaatattatttttgcgcttt    <  2:2770758‑M1/91‑89 (MQ=255)

                                                                                        aaaGCATAAAGAAATGCCCGAGCACTATAGCGAGGTGGTCGGGAATTTTTTAGGGTTTAATCTAGTTCTCAATGTTAGGTGCTTGGTTAac    <  2:3447353/91‑1 (MQ=255)

                                                                                        aaaGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAac    <  1:625406/91‑1 (MQ=255)

                                                                                        aaaGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAac    <  1:2514655/91‑1 (MQ=255)

                                                                                         aaccataaaaaattcccgaacaccttgttatagtgctcgggaatttttttatgctttacttgaatatatcaaatattatttttgcgctttc   <  2:137674‑M1/91‑90 (MQ=255)

                                                                                         aaGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAaca   >  2:1877723/1‑91 (MQ=255)

                                                                                          accataaaaaattcccgaacaccttgttatagtgctcgggaatttttttatgctttacttgaatatatcaaatattatttttgcgctttct  >  2:3622368‑M1/1‑1 (MQ=255)

                                                                                          accataaaaaattcccgaacaccttgttatagtgctcgggaatttttttatgctttacttgaatatatcaaatattatttttgcgctttct  >  2:564424‑M1/1‑1 (MQ=255)

                                                                                          aGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAacac  >  1:803231/1‑91 (MQ=255)

                                                                                          aGCATAAAAAAATTCCCGAGCACTATAACAAGGCGCTCGGGAATTTCTTATGGTTTAATTCAGTACTCACTGTTAGGTGCTTGGTTAacac  >  2:1229553/1‑91 (MQ=255)

ACCTACGCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACAC  >  USA300TCH1516_ALE/2772537‑2772717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.