| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2785840 | 246 (1.210) | 5 (0.030) | 4/150 | NT | 2.1% | intergenic (‑53/+371) | aur/isaB | Zinc metalloproteinase aureolysin/Immunodominant staphylococcal antigen B |
| ? | USA300TCH1516_ALE | = 2785854 | 240 (1.260) | intergenic (‑67/+357) | aur/isaB | Zinc metalloproteinase aureolysin/Immunodominant staphylococcal antigen B | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2785746‑2785840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttaCTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATGC < USA300TCH1516_ALE/2785854‑2785765 TGCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAA > 1:2223719/1‑91TGCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAA > 2:3885883/1‑91TGCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAA < 2:495109/91‑1TGCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAA > 1:775130/1‑91 GCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAATAACAGCTTATAAATAAAATATTAAT < 2:3955253/91‑1 GCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAAT < 1:1206090/91‑1 GCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAAT < 2:2263002/91‑1 GCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAAT < 2:2395016/91‑1 GCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAAT < 2:1207600/91‑1 GCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAAT < 2:1207552/91‑1 GCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAAT > 1:2412758/1‑91 CTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATT > 2:489288/1‑91 CTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATT < 2:1603003/91‑1 CTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATT > 2:489781/1‑91 CTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATT < 2:1477841/91‑1 CTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATT < 2:2809449/91‑1 CTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTAAAATCTTAAAAACAGCTTATAAATAAAATATTAATT < 2:1602482/91‑1 GCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATTTA > 2:1876123/1‑91 GCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATTTA > 2:3279419/1‑91 ATTTCCTCACATTTAATTACTCCTAAAATCTTAAAAACAGCTTATAAATAAAATATTAATTTACTTTTCTGA‑AAAATTAAATTAATATTTT < 2:1730573/91‑1 CTTATAAATAAAATATTAATTTAATTTT‑TCAGAAAAGTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATG > 1:1895333/1‑91 TAAAATATTAATTTAATTTT‑TCAGAAAAGTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAA > 1:783785/1‑91 AAATATTAATTTAATTTTTCAG‑AAAAGTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATT > 1:2537737/1‑91 AAATATTAATTTAATTTT‑TCAGAAAAGTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATT > 1:2537696/1‑91 ATTTACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGAT > 2:1552374/1‑91 TTTACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATA < 1:1672145/91‑1 TTTACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATA > 2:402900/1‑91 TTTACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTACGAAGAAATGAAATGTGAGGAAATTTTCAAGATA > 2:2708471/1‑91 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAATATATG > 2:3642163/1‑91 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 2:1519484/91‑1 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 2:2304843/91‑1 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 2:1519283/91‑1 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG > 2:1218626/1‑91 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG > 2:1072868/1‑91 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG > 2:1071577/1‑91 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 1:922982/91‑1 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 1:922888/91‑1 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 1:601480/91‑1 TACTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 1:482718/91‑1 TACTTTTCTGA‑AAAATTAAATTAATAGTTTATTTATAAGCTGTTTTTAAGATGTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATG < 2:3595045/91‑1 ACTATTCTGT‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATGC < 1:3557585/91‑1 TGCTGCCATACTTGTAAATGCATATCTTGAAAATTTCCTCACATTTCATTCCTCCTGAAATCTTAAAAACAGCTTATAAATAAAATATTAATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2785746‑2785840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttaCTTTTCTGA‑AAAATTAAATTAATATTTTATTTATAAGCTGTTTTTAAGATTTCAGGAGGAATGAAATGTGAGGAAATTTTCAAGATATGC < USA300TCH1516_ALE/2785854‑2785765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |