| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2863041 = | 188 (0.920) | 25 (0.140) | 11/142 | NT | 13.0% | intergenic (+11/+49) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2863075 = | 168 (0.930) | intergenic (+45/+15) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein | |||||
TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2863139‑2863041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT > USA300TCH1516_ALE/2863075‑2863164 TTGATTATATAAAGTCAGAATTCAATGTTCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAA > 2:1898698/1‑91TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAA < 2:934223/91‑1TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAA > 2:3602265/1‑91 TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC < 2:3062314/91‑1 TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC < 2:3529177/91‑1 TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC < 2:3529196/91‑1 TGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAAC < 1:3717359/91‑1 GATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACG > 2:27436/1‑91 ATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG < 2:3825988/91‑1 TTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGC < 1:494170/91‑1 TATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCCACGGCT > 1:1773957/1‑91 TATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCT > 1:848358/1‑91 TATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCT < 1:83125/91‑1 TATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCT < 2:188526/91‑1 TATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCT < 2:3255354/91‑1 ATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTT > 1:2473990/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGCGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT > 2:1636386/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGACAAGCCGTAGTTTCGAAGAGACCAACGGCTTT > 2:3829108/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGGTTT > 1:1096449/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT > 2:3018390/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT < 2:3418390/91‑1 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT > 2:2801078/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT > 1:2157851/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT > 1:3897992/1‑91 TATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGACTTCATAGCACAGAGAACAGCCGTAGCTTCGAAGAGACCAACGGCTct > 2:2982353/1‑89 ATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT < 2:3698883/91‑1 ATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT < 1:1703037/91‑1 TTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTG > 1:443998/1‑91 AAAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATA > 1:669323/1‑91 AAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTACGGCGAAGCACAGTGATCCTTGACTCCTGACTTTATAT > 2:1674602/1‑91 GCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAA > 1:3926215/1‑91 CCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAT > 1:1314457/1‑91 CCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAT > 1:1088591/1‑91 CCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAT > 1:636720/1‑91 CGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATC > 2:1478838/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCCTTGAATTCTGACTTTATATAATCA > 2:3677840/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 1:1504758/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 1:1423965/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 1:1423953/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 1:3248487/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 1:877387/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 1:3396893/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 1:3640915/1‑91 GTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCA > 2:3679158/1‑91 AGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAG > 1:2867494/1‑91 AGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAG > 1:2866282/1‑91 TTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAG > 2:1275364/1‑91 TTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAG > 1:1923314/1‑91 TTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAG > 1:3928566/1‑91 TCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTA > 1:3628740/1‑91 CGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTAT > 2:3496137/1‑91 CGAAGAGACCAACGGCTTTTCTCTGTGCTACAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTAT > 1:1718738/1‑91 ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGTATACA > 2:940453/1‑91 ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA > 2:1147296/1‑91 ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACA > 2:3816226/1‑91 CGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACAC < 2:758831/91‑1 CGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACAC > 1:724237/1‑91 CGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACAC < 1:1906055/91‑1 GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT < 2:109897/91‑1 GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT < 2:180726/91‑1 GGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACT < 2:1747290/91‑1 GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG > 1:1779805/1‑91 GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG < 2:28694/91‑1 GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG > 1:2475671/1‑91 GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG < 1:3816525/91‑1 GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG < 1:3816851/91‑1 GCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTG < 1:3816971/91‑1 CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA < 2:3326111/91‑1 CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA > 2:2050436/1‑91 CTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGA < 2:3326093/91‑1 TTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGAT < 2:549958/91‑1 TTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTTATG > 2:1583624/1‑91 TTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATG < 1:3812299/91‑1 TTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATG > 1:2636063/1‑91 TTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGA < 2:993547/91‑1 TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT < 1:3912475/91‑1 TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT < 2:3488119/91‑1 TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT > 1:3603500/1‑91 TCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT < 2:3487380/91‑1 TCTCTGTGCTATAAAATCAGCATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGAAGCTTTGGATACACTGATTAT > 2:691397/1‑91 TTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2863139‑2863041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGAT > USA300TCH1516_ALE/2863075‑2863164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |