| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2863041 = | 188 (0.920) | 25 (0.140) | 11/142 | NT | 13.0% | intergenic (+11/+49) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2863075 = | 168 (0.930) | intergenic (+45/+15) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein | |||||
Only 100 of 272 total aligned reads displayed.
TAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTAT > USA300TCH1516_ALE/2862951‑2863131 | atcatcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagaga < 2:3488119‑M1/1‑1 (MQ=255)atcatcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagaga > 1:3603500‑M1/91‑91 (MQ=255) cataagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaaa > 2:1583624‑M1/89‑91 (MQ=255) cagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGc < 1:3816851‑M1/6‑1 (MQ=255) cagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGc > 1:2475671‑M1/86‑91 (MQ=255) cagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGc < 2:28694‑M1/6‑1 (MQ=255) cagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGc > 1:1779805‑M1/86‑91 (MQ=255) gtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCg < 1:1906055‑M1/8‑1 (MQ=255) gtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCg < 2:758831‑M1/8‑1 (MQ=255) gtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCg > 1:724237‑M1/84‑91 (MQ=255) tgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGt > 2:1147296‑M1/83‑91 (MQ=255) gAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGtt > 1:2874101/1‑91 (MQ=35) gAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGtt < 2:541595/91‑1 (MQ=35) acacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTgg < 1:1684857/91‑1 (MQ=38) acacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTgg > 2:2542670/1‑91 (MQ=38) cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGt > 1:874130/1‑91 (MQ=39) cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGt > 2:3262480/1‑91 (MQ=39) cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGt > 2:2226238/1‑91 (MQ=39) cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGt < 1:2664994/91‑1 (MQ=39) cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGt > 1:2687067/1‑91 (MQ=39) ttcgAAGTATTTATTAGTTTCATCAAAGAAGATAAACTTGTCCAGCTTTATTATACAAACTAAAGATTTATAAAAATTCCGTTGGTCTCtt < 2:1789911/88‑1 (MQ=14) tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTc > 2:1693774/1‑91 (MQ=255) ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCg < 2:3803043/91‑1 (MQ=255) ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCg > 2:2765561/1‑91 (MQ=255) ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCg > 1:2508344/1‑91 (MQ=255) ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCg > 2:3319621/1‑91 (MQ=255) gTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAAc < 2:703629/91‑1 (MQ=255) tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACt < 1:3246703/91‑1 (MQ=255) aTTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTa < 2:1240227/91‑1 (MQ=255) tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTAc > 1:3173207/1‑91 (MQ=255) tgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTAc > 1:3640915‑M1/65‑91 (MQ=255) ttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACg < 1:2096396/91‑1 (MQ=255) tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACgg < 1:1125596/91‑1 (MQ=255) attatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACgg > 1:1314457‑M1/63‑91 (MQ=255) aTGAGTTTCATCGAAGATGATAAACTTGTCCAGGTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:3505115‑M1/91‑1 (MQ=255) aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:418117‑M1/91‑1 (MQ=255) tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:1587287‑M1/91‑1 (MQ=255) tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTCACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT > 2:3255538‑M1/1‑91 (MQ=255) gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:1626419‑M1/91‑1 (MQ=255) gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT > 1:1023241‑M1/1‑91 (MQ=255) gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:2364681‑M1/91‑1 (MQ=255) aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 1:149495‑M1/91‑1 (MQ=255) aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 1:2000172‑M1/91‑1 (MQ=255) gTTTCATCGTAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT < 1:3783558‑M1/91‑1 (MQ=255) gTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT > 2:653273‑M1/1‑91 (MQ=255) tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtctc < 2:3875662/91‑1 (MQ=255) cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTctct < 1:2400662/91‑1 (MQ=255) aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg > 1:926767/1‑91 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 1:2058504/1‑91 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 2:1060519/1‑91 (MQ=255) gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc > 1:3038054/1‑91 (MQ=255) aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt < 1:1151287/91‑1 (MQ=255) aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta > 1:883699/1‑91 (MQ=255) aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta > 2:749255/1‑91 (MQ=255) aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta > 1:3880540/1‑91 (MQ=255) tgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGATGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaa > 1:3572418/1‑91 (MQ=255) tgatAAACTTGTCCAGCTTAAGTTGGCAATCTAAAGATTTATAAAAAAGCCGTGGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaa < 2:2453044/91‑1 (MQ=255) gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa > 1:3264880/1‑91 (MQ=255) gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa > 2:437971/1‑91 (MQ=255) atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa < 1:2851499/91‑1 (MQ=255) atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa < 2:1371864/91‑1 (MQ=255) tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt > 2:1871535/1‑91 (MQ=255) tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt < 2:1494398/91‑1 (MQ=255) aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCa > 1:661279/1‑91 (MQ=255) aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg < 1:3307628/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt < 2:3151038/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt < 1:216909/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt < 2:1408341/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTCGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt > 2:3546050/1‑91 (MQ=255) tGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTAt > 2:812409/1‑91 (MQ=255) gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa > 1:2944025/1‑91 (MQ=255) gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa > 1:672022/1‑91 (MQ=255) gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa > 2:172230/1‑91 (MQ=255) cTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg < 2:3049407/91‑1 (MQ=255) ttAATGTGGCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGc < 2:3660284/91‑1 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca > 1:2282977/1‑91 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca > 2:3332763/1‑91 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCCTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTGTAAAATCAGTACGGCGAAGcaca > 2:3018721/1‑91 (MQ=38) tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg < 2:574008/91‑1 (MQ=255) tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg > 1:585724/1‑91 (MQ=255) tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg < 2:571677/91‑1 (MQ=255) ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt < 2:1996017/91‑1 (MQ=255) ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt > 2:3738469/1‑91 (MQ=255) tGACAATCTAAAGACTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg > 2:3820148/1‑91 (MQ=255) aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt > 2:2099225/1‑91 (MQ=255) aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt > 1:2853148/1‑91 (MQ=255) cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc < 2:3140070/91‑1 (MQ=255) tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt < 1:102934/91‑1 (MQ=255) cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg < 1:69872/91‑1 (MQ=255) cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg > 1:3924026/1‑91 (MQ=255) cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg > 1:1099772/1‑91 (MQ=255) aaaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa > 1:253403/1‑91 (MQ=255) aaaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa < 2:93928/91‑1 (MQ=255) ttATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGa < 1:468014/91‑1 (MQ=255) tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc > 2:3415907/1‑91 (MQ=255) tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc > 1:3097501/1‑91 (MQ=255) ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt < 1:2888222/91‑1 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt < 2:2603078/91‑1 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt < 1:1353730/91‑1 (MQ=255) AAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtat < 2:3698883‑M1/91‑1 (MQ=255) | TAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTAT > USA300TCH1516_ALE/2862951‑2863131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |