BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2863041 =	188 (0.920)	25 (0.140)	11/142	NT	13.0%	intergenic (+11/+49)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	2863075 =	168 (0.930)	25 (0.140)	11/142	NT	13.0%	intergenic (+45/+15)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein

Only 100 of 278 total aligned reads displayed.

TTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATA  >  USA300TCH1516_ALE/2862985‑2863165

  tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtctc                                                                                          <  2:3751088/91‑1 (MQ=255)

    aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtg                                                                                        >  1:926767/1‑91 (MQ=255)

     tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt                                                                                       <  1:2170571/91‑1 (MQ=255)

      cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg                                                                                      <  1:1644141/91‑1 (MQ=255)

       gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc                                                                                     <  2:3195109/91‑1 (MQ=255)

       gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc                                                                                     >  1:3037848/1‑91 (MQ=255)

        aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                    <  1:1151287/91‑1 (MQ=255)

         aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta                                                                                   >  2:749255/1‑91 (MQ=255)

           atgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCtata                                                                                 <  1:662593/91‑1 (MQ=255)

            tgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaa                                                                                >  1:3572060/1‑91 (MQ=255)

             gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                               >  2:1408323/1‑91 (MQ=255)

             gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                               >  1:3264880/1‑91 (MQ=255)

             gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                               >  2:437971/1‑91 (MQ=255)

             caatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                               >  1:443998‑M1/44‑91 (MQ=255)

              atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa                                                                              <  2:1371864/91‑1 (MQ=255)

              atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa                                                                              <  1:2852084/91‑1 (MQ=255)

                 aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCa                                                                           >  1:698061/1‑91 (MQ=255)

                 aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCa                                                                           <  1:2318215/91‑1 (MQ=255)

                 aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCa                                                                           >  1:3217844/1‑91 (MQ=255)

                   cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt                                                                         <  1:25208/91‑1 (MQ=255)

                     tGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTAt                                                                       >  2:812408/1‑91 (MQ=255)

                       tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATgg                                                                     <  2:3354190/91‑1 (MQ=255)

                         cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg                                                                   >  2:2764030/1‑91 (MQ=255)

                         cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg                                                                   <  2:2489836/91‑1 (MQ=255)

                             ttAATGTGGCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGc                                                               <  2:3660284/91‑1 (MQ=255)

                               aaTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcac                                                             <  1:2005094/91‑1 (MQ=255)

                                 tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg                                                           >  1:585724/1‑91 (MQ=255)

                                 tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg                                                           <  2:571677/91‑1 (MQ=255)

                                  ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                          <  2:1996017/91‑1 (MQ=255)

                                  ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                          <  1:2628638/91‑1 (MQ=255)

                                     aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt                                                       >  1:3557154/1‑91 (MQ=255)

                                     aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt                                                       >  2:2099225/1‑91 (MQ=255)

                                      cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc                                                      <  2:2163542/91‑1 (MQ=255)

                                      cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc                                                      <  2:3140070/91‑1 (MQ=255)

                                       aaTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCa                                                     >  2:2661434/1‑91 (MQ=255)

                                         tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt                                                   <  1:102934/91‑1 (MQ=255)

                                          cTATAGATTCATAAAAAAGCCGTTGGTCTCGGCGAAACTACGGCTTTTCTCTGTGCTATAAACCCAGTATGGCGAAGCACAGTGATCATTg                                                  <  2:641416/91‑1 (MQ=255)

                                          cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                  <  1:69961/91‑1 (MQ=255)

                                          cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                  <  1:2092951/91‑1 (MQ=255)

                                            aaaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                                <  2:93928/91‑1 (MQ=255)

                                             aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                               <  1:2902107/91‑1 (MQ=255)

                                             aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                               >  1:1106359/1‑91 (MQ=255)

                                               gATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGAGAAGCACAGTGATCATTGAATTc                                             >  2:3020850/1‑91 (MQ=255)

                                                  ttATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGa                                          <  1:468053/91‑1 (MQ=255)

                                                   tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                         >  1:3097501/1‑91 (MQ=255)

                                                    ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt                                        >  1:1329817/1‑91 (MQ=255)

                                                    ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt                                        <  1:2888222/91‑1 (MQ=255)

                                                       aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                     <  1:3747590/91‑1 (MQ=255)

                                                         agAGCCGTTGGTCTCTTCGAAGCTACGGCTGTTCTCTGTGCTATGAAGTCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                   >  2:2982353‑M1/3‑91 (MQ=255)

                                                         AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                   >  2:2801078‑M1/1‑91 (MQ=255)

                                                         AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                   >  2:3018390‑M1/1‑91 (MQ=255)

                                                         AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                   <  2:3418390‑M1/91‑1 (MQ=255)

                                                         AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCGCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                   >  2:1636386‑M1/1‑91 (MQ=255)

                                                           AGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtatata                                 <  2:3255354‑M1/91‑1 (MQ=255)

                                                           AGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtatata                                 <  2:188526‑M1/91‑1 (MQ=255)

                                                             ccgtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAt                               >  1:1088591‑M2/30‑91 (MQ=255)

                                                             CCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAt                               <  2:3825988‑M1/91‑1 (MQ=255)

                                                              cgtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATc                              >  2:1478838‑M2/29‑91 (MQ=255)

                                                               gtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa                             >  1:1423953‑M2/28‑91 (MQ=255)

                                                               gtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa                             >  1:877387‑M2/28‑91 (MQ=255)

                                                               gtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa                             >  1:3640915‑M2/28‑91 (MQ=255)

                                                               GTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa                             <  2:3529177‑M1/91‑1 (MQ=255)

                                                               GTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa                             <  2:3062314‑M1/91‑1 (MQ=255)

                                                                TTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa                            <  2:934223‑M1/91‑1 (MQ=255)

                                                                 tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGGCTTTATATAATCAag                           <  1:2676204/91‑1 (MQ=255)

                                                                 tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                           <  2:3730706/91‑1 (MQ=255)

                                                                 tGGTCTCTTCGAAACTACGGCTTTTCCCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                           >  1:235342/1‑91 (MQ=255)

                                                                 agtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                           >  1:2866282‑M2/26‑91 (MQ=255)

                                                                  ggTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga                          <  2:1740418/91‑1 (MQ=255)

                                                                   tttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                         >  1:3928566‑M2/24‑91 (MQ=255)

                                                                   tttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                         >  2:1275364‑M2/24‑91 (MQ=255)

                                                                    tctcTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGt                        <  2:3573174/91‑1 (MQ=255)

                                                                      cgaagagaccaacggcttttCTCTGTGCTACAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTAt                      >  1:1718738‑M2/21‑91 (MQ=255)

                                                                        ttCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt                    <  1:2829134/91‑1 (MQ=255)

                                                                         tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                   <  1:3883516/91‑1 (MQ=255)

                                                                         tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                   <  2:1089642/91‑1 (MQ=255)

                                                                         tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                   <  2:1090094/91‑1 (MQ=255)

                                                                         tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                   <  2:1675709/91‑1 (MQ=255)

                                                                          cGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATccaa                  <  2:3695254/91‑4 (MQ=255)

                                                                            aaaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTgg                >  1:1319611/1‑91 (MQ=255)

                                                                             aaCTACGGCTTTTCTCTGTGCTATAAACTCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa               <  2:2870972/91‑1 (MQ=255)

                                                                             aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCATAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa               <  1:3132516/91‑1 (MQ=255)

                                                                             aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa               <  2:2351946/91‑1 (MQ=255)

                                                                             aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa               <  2:3839348/91‑1 (MQ=255)

                                                                              aCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGAt              <  1:2591671/91‑1 (MQ=255)

                                                                               cTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATa             <  1:781834/91‑1 (MQ=255)

                                                                                tACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATac            <  1:2423772/91‑1 (MQ=255)

                                                                                 acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca           >  2:3816226‑M2/10‑91 (MQ=255)

                                                                                 acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca           >  2:1147296‑M2/10‑91 (MQ=255)

                                                                                  cggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATacac          <  1:1906055‑M2/83‑1 (MQ=255)

                                                                                   ggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACt         <  2:180726‑M2/84‑1 (MQ=255)

                                                                                    gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg        <  1:3816525‑M2/85‑1 (MQ=255)

                                                                                    gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg        <  1:3816971‑M2/85‑1 (MQ=255)

                                                                                    gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg        >  1:2475671‑M2/7‑91 (MQ=255)

                                                                                     cttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtga       <  2:3326093‑M2/86‑1 (MQ=255)

                                                                                      ttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgat      <  2:549958‑M2/87‑1 (MQ=255)

                                                                                       tttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACttatg     >  2:1583624‑M2/4‑91 (MQ=255)

                                                                                         tCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTgatgat   <  1:3912475‑M2/90‑1 (MQ=255)

                                                                                         tCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTgatgat   >  1:3603500‑M2/2‑91 (MQ=255)

                                                                                         tCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTgatgat   <  2:3487380‑M2/90‑1 (MQ=255)

TTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATA  >  USA300TCH1516_ALE/2862985‑2863165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.