| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 186 (0.910) | 22 (0.120) | 11/150 | NT | 11.2% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGGTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:3505115/91‑1ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:418117/91‑1ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGC < 1:705016/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT < 1:1587287/91‑1 TGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTCACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCT > 2:3255538/1‑91 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT > 1:1023249/1‑91 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT > 1:1023241/1‑91 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:1626419/91‑1 GAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTT < 2:2364681/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 1:2000172/91‑1 AGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTT < 1:149495/91‑1 GTTTCATCGTAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT < 1:3783558/91‑1 GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT > 2:1029926/1‑91 GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT > 2:653273/1‑91 TAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGA > 2:1952753/1‑91 AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCCAATTACGCTGGACAAGTTAATCATCTTCGATGAAACa > 2:180148/1‑90 AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACT > 1:1938413/1‑91 AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCACCTTCGATGAAACT > 1:3950263/1‑91 AGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCA > 1:1732596/1‑91 AGCCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCA > 2:743003/1‑91 CCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATA > 2:2976906/1‑91 CCGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATA > 1:623726/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 1:3327910/1‑91 CGTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAA > 2:400215/1‑91 GTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAA > 2:3099177/1‑91 GTTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAA > 1:549234/1‑91 TTGGTCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAAT > 2:1275252/1‑91 TCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTT > 1:2116730/1‑91 TCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTT > 1:847199/1‑91 TCTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTT > 1:847312/1‑91 CTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTC > 1:1651241/1‑91 CTCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTC > 1:1651202/1‑91 CTCTTCGAAACTACGGCCCTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTC > 1:1651229/1‑91 TCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCC > 2:3840714/1‑91 TCTTCGAAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCC > 1:621256/1‑91 AAACTACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGT > 1:1826869/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 2:3796154/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 2:3351453/1‑91 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 2:984089/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:2159576/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT < 1:3183458/91‑1 ACGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCT > 1:3897995/1‑91 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:1960851/91‑1 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 2:3935474/91‑1 CGGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTA < 1:2550618/91‑1 CGGCTTTGTTATAAATCTGTAGATTGTCAAATTAAGCTGGACAAGTTTATCAGCTGCGATGAAACTCATAAATACTTCCAATGGTGTGCTA < 2:602299/91‑1 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT < 2:1838325/91‑1 GGCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTAT < 2:3806276/91‑1 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA < 1:3661464/91‑1 GCTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATA < 1:2188456/91‑1 CTTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAA > 1:1823275/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 2:1360747/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 1:3438305/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:3833313/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:3833446/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC < 2:2632215/91‑1 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 2:2379275/1‑91 TTTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAAC > 1:552961/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC < 2:2694254/91‑1 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 2:2162258/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC > 2:1817771/1‑91 TTTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACC < 2:812528/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:2969384/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 2:2203011/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT > 1:2547181/1‑91 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:2520453/91‑1 TTTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCT < 1:2519897/91‑1 TTTATGAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < 2:3668053/91‑1 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA > 2:286211/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA > 1:3896925/1‑91 TTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA > 2:1540400/1‑91 ATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2862980‑2863074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttTTATAAATCTTTAGATTGTCAAATTAAGCTGGACAAGTTTATCATCTTCGATGAAACTCATAAATACTTCCAATGGTGTTCTATAACCTA < USA300TCH1516_ALE/2864026‑2863937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |