BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	186 (0.910)	22 (0.120)	11/150	NT	11.2%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	22 (0.120)	11/150	NT	11.2%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein

Only 100 of 282 total aligned reads displayed.

GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGA  >  USA300TCH1516_ALE/2862984‑2863163

   tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtctc                                                                                        >  1:3581230/1‑91 (MQ=255)

    cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTctct                                                                                       >  1:1108705/1‑91 (MQ=255)

      tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt                                                                                     <  1:2170571/91‑1 (MQ=255)

       cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg                                                                                    <  1:1644141/91‑1 (MQ=255)

       cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg                                                                                    <  2:1045265/91‑1 (MQ=255)

       cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg                                                                                    <  2:2340993/91‑1 (MQ=255)

        gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc                                                                                   <  2:3195109/91‑1 (MQ=255)

        gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc                                                                                   >  1:3038054/1‑91 (MQ=255)

         aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                  <  1:2695927/91‑1 (MQ=255)

          aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta                                                                                 >  2:210377/1‑91 (MQ=255)

              gatAAACTTGTCCAGCTTAATTTGACTATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                             >  2:165430/1‑91 (MQ=255)

              gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                             >  2:437971/1‑91 (MQ=255)

              gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                             >  2:1408323/1‑91 (MQ=255)

              gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                             <  1:2504821/91‑1 (MQ=255)

              caatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa                                                                             >  1:443998‑M1/44‑91 (MQ=255)

               atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa                                                                            <  1:2852084/91‑1 (MQ=255)

               atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaaa                                                                            <  1:2851499/91‑1 (MQ=255)

                tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt                                                                           <  1:472263/91‑1 (MQ=255)

                tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt                                                                           <  2:1494398/91‑1 (MQ=255)

                tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt                                                                           >  2:1871535/1‑91 (MQ=255)

                tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTGATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt                                                                           <  2:3654619/91‑1 (MQ=255)

                      tGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTAt                                                                     >  2:812408/1‑91 (MQ=255)

                       gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATg                                                                    >  1:1266899/1‑91 (MQ=255)

                        tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGCTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATgg                                                                   >  2:3003335/1‑91 (MQ=255)

                          cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg                                                                 <  2:2489836/91‑1 (MQ=255)

                            gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGaa                                                               >  1:672022/1‑91 (MQ=255)

                             cTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCTAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg                                                              <  2:3050091/91‑1 (MQ=255)

                                aaTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcac                                                           <  1:2005094/91‑1 (MQ=255)

                                 aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                          >  1:2282977/1‑91 (MQ=255)

                                 aTTTGACAATCTAAAGATTTATAAAAAAGCCCTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTACGGCGAAGcaca                                                          >  2:3018858/1‑91 (MQ=255)

                                  tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg                                                         <  2:571704/91‑1 (MQ=255)

                                  tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg                                                         <  2:550804/91‑1 (MQ=255)

                                  tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg                                                         >  2:2776840/1‑91 (MQ=255)

                                   ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                        <  1:2628638/91‑1 (MQ=255)

                                   ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                        >  2:3738469/1‑91 (MQ=255)

                                    tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                       >  2:3820436/1‑91 (MQ=255)

                                    tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                       <  1:907927/91‑1 (MQ=255)

                                    tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                       <  2:1939720/91‑1 (MQ=255)

                                       cAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc                                                    <  2:2163542/91‑1 (MQ=255)

                                         aTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAt                                                  <  2:1614304/91‑1 (MQ=255)

                                          tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt                                                 <  1:102934/91‑1 (MQ=255)

                                           cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                >  1:3924026/1‑91 (MQ=255)

                                           cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                <  1:2092951/91‑1 (MQ=255)

                                           cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg                                                <  1:69872/91‑1 (MQ=255)

                                             aaaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                              >  2:3299471/1‑91 (MQ=255)

                                              aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                             <  1:2902107/91‑1 (MQ=255)

                                                    tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                       >  2:3415907/1‑91 (MQ=255)

                                                    tataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                       >  1:3097519/1‑91 (MQ=255)

                                                     ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt                                      >  1:1329817/1‑91 (MQ=255)

                                                     ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt                                      <  1:2888222/91‑1 (MQ=255)

                                                       aaaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACttt                                    >  2:3141965/1‑91 (MQ=255)

                                                        aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                   <  1:3747590/91‑1 (MQ=255)

                                                        aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                   <  1:253029/91‑1 (MQ=255)

                                                         AAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtat                                  <  1:1703037‑M1/91‑1 (MQ=255)

                                                          AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                 >  1:3897992‑M1/1‑91 (MQ=255)

                                                          AAACCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                 >  1:1096449‑M1/1‑91 (MQ=255)

                                                            aGCCGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactca                               >  2:743003‑M1/1‑31 (MQ=255)

                                                              ccGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcata                             >  2:2976906‑M1/1‑29 (MQ=255)

                                                              ccGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcata                             >  1:623726‑M1/1‑29 (MQ=255)

                                                               cGTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataa                            >  1:3327910‑M1/1‑28 (MQ=255)

                                                               CGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATc                            >  2:27436‑M1/1‑91 (MQ=255)

                                                                gTTGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaa                           >  2:3099177‑M1/1‑27 (MQ=255)

                                                                GTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa                           <  2:3529177‑M1/91‑1 (MQ=255)

                                                                 ttGGTCTCTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaat                          >  2:1275252‑M1/1‑26 (MQ=255)

                                                                  tGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                         <  2:1121287/91‑1 (MQ=255)

                                                                  tGGTCTCTTCGAAACTACGGCTTTTCCCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag                         >  1:235342/1‑91 (MQ=255)

                                                                   ggTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga                        <  2:1740418/91‑1 (MQ=255)

                                                                     tctcTTCGAAACTACGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatactt                      >  1:847312‑M1/1‑22 (MQ=255)

                                                                     tctcTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGt                      <  2:3573174/91‑1 (MQ=255)

                                                                      ctctTCGAAACTACGGCCCTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttc                     >  1:1651229‑M1/1‑21 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                 <  2:93210/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                 <  2:93664/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                 <  1:3569362/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                 <  1:2978273/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                 <  1:3883516/91‑1 (MQ=255)

                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                 <  2:1089654/91‑1 (MQ=255)

                                                                           cGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATccaa                <  2:3695254/91‑4 (MQ=255)

                                                                              aaCTACGGCTTTTCTCTGTGCTATAAACTCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa             <  2:2870972/91‑1 (MQ=255)

                                                                              aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa             >  1:3231016/1‑91 (MQ=255)

                                                                              aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa             <  2:3839348/91‑1 (MQ=255)

                                                                                cTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATa           <  1:781834/91‑1 (MQ=255)

                                                                                 tACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATac          <  1:2423772/91‑1 (MQ=255)

                                                                                  aCGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttct         >  2:3351453‑M1/1‑9 (MQ=255)

                                                                                  aCGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttct         <  1:2159576‑M1/91‑83 (MQ=255)

                                                                                  aCGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttct         <  2:3796154‑M1/91‑83 (MQ=255)

                                                                                  aCGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttct         <  1:3183458‑M1/91‑83 (MQ=255)

                                                                                   cGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttcta        <  1:2550618‑M1/91‑84 (MQ=255)

                                                                                   cGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttcta        <  2:1960851‑M1/91‑84 (MQ=255)

                                                                                   cGGCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttcta        <  2:3935474‑M1/91‑84 (MQ=255)

                                                                                   cGGCTTTGttataaatctgtagattgtcaaattaagctggacaagtttatcagctgcgatgaaactcataaatacttccaatggtgtgcta        <  2:602299‑M1/91‑84 (MQ=255)

                                                                                    ggCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctat       <  2:3806276‑M1/91‑85 (MQ=255)

                                                                                     gCTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctata      <  1:3661464‑M1/91‑86 (MQ=255)

                                                                                      cTTTTttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataa     >  1:1823275‑M1/1‑5 (MQ=255)

                                                                                       ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac    >  1:3833313‑M1/1‑4 (MQ=255)

                                                                                       ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac    >  1:552961‑M1/1‑4 (MQ=255)

                                                                                       ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac    <  2:1360747‑M1/91‑88 (MQ=255)

                                                                                       ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac    >  2:2379275‑M1/1‑4 (MQ=255)

                                                                                       ttttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataac    <  2:2632215‑M1/91‑88 (MQ=255)

                                                                                        tttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacc   >  2:1817771‑M1/1‑3 (MQ=255)

                                                                                         ttttataaatctttagattgtcaaattaagctggacaagtttatcatcttcgatgaaactcataaatacttccaatggtgttctataacct  <  1:2519897‑M1/91‑90 (MQ=255)

GTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGA  >  USA300TCH1516_ALE/2862984‑2863163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.