BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	186 (0.910)	22 (0.120)	11/150	NT	11.2%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	22 (0.120)	11/150	NT	11.2%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein

Only 100 of 243 total aligned reads displayed.

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

tataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAgg                                                                                      >  1:3496113/1‑91 (MQ=31)

 ataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGga                                                                                     <  2:2925053/91‑1 (MQ=32)

  taGAACACCATTGGAAGTATTTGTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    <  2:3178890/91‑1 (MQ=18)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    <  2:2480227/91‑1 (MQ=33)

  taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    <  1:3913763/91‑1 (MQ=33)

   aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAAC‑TGTCCAGCTTAATTTGACAATCTAAAGCTATATAGAAAAGgagag                                                                                  <  2:779839/91‑1 (MQ=11)

     aaCACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgagaga                                                                                 <  2:1969669/91‑1 (MQ=37)

      acacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAt                                                                                >  2:1169118/1‑91 (MQ=38)

       cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:301645/1‑91 (MQ=39)

        acCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTg                                                                              <  2:2667468/91‑1 (MQ=40)

        acCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTg                                                                              <  1:664799/91‑1 (MQ=40)

           aTTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAAt                                                                           <  1:3254444/91‑1 (MQ=255)

            ttGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATc                                                                          >  1:1486039/1‑91 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  1:1531510/91‑1 (MQ=255)

             tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCT‑AAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  2:2626655/1‑91 (MQ=255)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  1:3734814/1‑91 (MQ=255)

              ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  1:3398193/1‑91 (MQ=255)

                aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGa                                                                      >  1:1108672/1‑91 (MQ=255)

                aaGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGa                                                                      <  2:2063697/91‑1 (MQ=255)

                 aGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGaa                                                                     >  1:3532530/1‑91 (MQ=255)

                  gTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGaaa                                                                    <  1:2504950/91‑1 (MQ=255)

                   tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   <  1:3117475/91‑1 (MQ=255)

                    aTTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAtt                                                                  <  1:2398981/91‑1 (MQ=255)

                     tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 >  1:1862935/1‑91 (MQ=255)

                      ttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTa                                                                >  2:1583645/1‑91 (MQ=255)

                       tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               >  2:348182/1‑91 (MQ=255)

                       tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               <  2:608121/91‑1 (MQ=255)

                        aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTaga                                                              >  2:1961110/1‑91 (MQ=255)

                         tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTagag                                                             >  2:1306577/1‑91 (MQ=255)

                         tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTagag                                                             <  1:3697353/91‑1 (MQ=255)

                          gAGTTTCATCGAGGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAgaga                                                            >  1:3032714/1‑91 (MQ=255)

                          gAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAgaga                                                            >  1:3811494/1‑91 (MQ=255)

                           aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           >  1:3015366/1‑91 (MQ=255)

                           aGTTTAATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAAAAAAATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           <  2:2969589/91‑1 (MQ=21)

                            gTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCGTGAAATTTAGAGAAt                                                          <  1:999441/91‑1 (MQ=255)

                               tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAg                                                       <  2:142578/91‑1 (MQ=255)

                               tCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAg                                                       >  1:1003051/1‑91 (MQ=255)

                                 aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTa                                                     <  1:1924261/91‑1 (MQ=255)

                                 aTCGAAGATGATAAACTTGTCCAGCTTAATTTGAAAATCTAAAGATGTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTa                                                     <  2:2812304/91‑1 (MQ=255)

                                  tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    >  2:1752749/1‑91 (MQ=255)

                                    gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaaa                                                  <  2:3330046/91‑1 (MQ=255)

                                     aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAAc                                                 <  1:214556/91‑1 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  2:212300/1‑91 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                <  2:3767480/91‑1 (MQ=255)

                                      aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                <  2:3963378/91‑1 (MQ=255)

                                          gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  2:702801/1‑91 (MQ=255)

                                           atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCat                                           >  2:665129/1‑91 (MQ=255)

                                             aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCatat                                         >  1:48506/1‑91 (MQ=255)

                                             aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCatat                                         <  2:2059814/91‑1 (MQ=255)

                                               aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGa                                       >  2:2583234/1‑91 (MQ=255)

                                                 ttGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAgg                                     <  1:2621868/91‑1 (MQ=255)

                                                   gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAt                                   >  2:3345682/1‑91 (MQ=255)

                                                   gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAt                                   <  1:3412113/91‑1 (MQ=255)

                                                   gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAt                                   >  2:1606221/1‑91 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  <  1:2035115/91‑1 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  >  1:317737/1‑91 (MQ=255)

                                                    tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  <  2:1977902/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  2:2425264/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               >  2:274039/1‑91 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               >  1:232802/1‑91 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:337472/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:512521/91‑1 (MQ=255)

                                                       aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:1639017/91‑1 (MQ=255)

                                                        gCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaa                              <  2:1271126/91‑1 (MQ=255)

                                                        gCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaa                              <  1:813578/91‑1 (MQ=255)

                                                           tAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaaaa                           <  2:1393879/91‑1 (MQ=255)

                                                            aaTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAt                          >  1:3054922/1‑91 (MQ=255)

                                                            aaTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAt                          >  1:2661196/1‑91 (MQ=255)

                                                             aTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAtt                         <  1:828734/91‑1 (MQ=255)

                                                              tttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGCGAATTAGTAAAACAATCATATGAGGCTCTGAGAAAttt                        >  2:62244/1‑91 (MQ=18)

                                                              tttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGTATTAGTAAAACAATCATATGAGGATTTGAAAAAttt                        >  2:3091208/1‑91 (MQ=255)

                                                              tttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAttt                        <  1:2836404/91‑1 (MQ=255)

                                                              tttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAttt                        >  2:2861995/1‑91 (MQ=255)

                                                               ttaaCAATATAAAGATTAATAAAAAAGGAGAGAGCGAATCATGAAATTTAGAGAATTAGTAAAACAACCATATGAGGATCTGAAAAATTTg                       >  2:3225062/4‑91 (MQ=14)

                                                               ttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTg                       >  1:3636555/1‑91 (MQ=255)

                                                               ttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTg                       >  1:2876509/1‑91 (MQ=255)

                                                                tGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGa                      <  2:1199262/91‑1 (MQ=255)

                                                                 gACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGAc                     <  2:2233824/91‑1 (MQ=255)

                                                                 aaaaaTATAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGAc                     <  2:2938417/88‑1 (MQ=255)

                                                                  aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACt                    <  1:1713662/91‑1 (MQ=255)

                                                                   cAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAACGTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTg                   <  2:3476491/91‑1 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTgca                 >  2:3618636/1‑89 (MQ=255)

                                                                     aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 <  1:773910/91‑1 (MQ=255)

                                                                      tCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTaa                >  2:3146249/1‑91 (MQ=255)

                                                                       cTAAAGATTTATAAAAAAGGAGAGATTGATTCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAAc               >  2:3447342/1‑91 (MQ=255)

                                                                        tAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACt              >  2:3407879/1‑91 (MQ=255)

                                                                         aaaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACtt             >  1:1337128/1‑91 (MQ=255)

                                                                          aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTg            <  2:2848250/91‑1 (MQ=255)

                                                                          aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTg            <  2:1784161/91‑1 (MQ=255)

                                                                          aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATATAGAGAATTAGTAAAACAATCATATGCGGATTTGAAAAATTTGACTGTAACTTg            >  2:1077821/1‑91 (MQ=255)

                                                                           aGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTgg           >  1:1413537/1‑91 (MQ=255)

                                                                            gATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGt          >  1:871116/1‑91 (MQ=40)

                                                                            gATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGt          <  2:1027585/91‑1 (MQ=40)

                                                                                tataAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATaa      >  1:365871/1‑91 (MQ=35)

                                                                                 ataAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAAc     <  2:521909/91‑1 (MQ=34)

                                                                                 ataAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAAc     >  2:1828298/1‑91 (MQ=34)

                                                                                  taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    <  1:1185672/91‑1 (MQ=33)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:2750452/1‑91 (MQ=32)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:3916556/1‑91 (MQ=32)

                                                                                   aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATAATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  2:3715130/1‑91 (MQ=17)

TATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863942‑2864116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.