| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2866995 | 150 (0.740) | 23 (0.140) | 13/134 | NT | 14.6% | intergenic (‑394/+59) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein |
| ? | USA300TCH1516_ALE | = 2867006 | 144 (0.850) | intergenic (‑405/+48) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
ATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2866893‑2866995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacaaagctAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCAAT < USA300TCH1516_ALE/2867006‑2866917 ATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAA > 1:889832/1‑91ATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAA < 1:2150126/91‑1 TATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAA < 1:561961/91‑1 TAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA > 2:3736038/1‑91 TAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA < 1:162220/91‑1 TAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA < 1:440709/91‑1 TAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA < 1:1805579/91‑1 AACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAG < 1:462252/91‑1 AACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAG < 1:462309/91‑1 ACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGA > 2:2987184/1‑91 ACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGA > 2:2387665/1‑91 ACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGA < 1:2091298/91‑1 ACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAA‑‑AAAAAAAAAGAC < 2:931966/91‑1 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 2:3882139/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 1:1752364/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 1:2343681/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC < 2:2170879/91‑1 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 1:2509863/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 2:1585115/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 2:674182/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 1:2766229/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGAC > 2:3392848/1‑91 TTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACA < 1:554700/91‑1 TTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACA < 1:3911747/91‑1 TTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACA < 1:2520041/91‑1 TTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACA < 1:2520138/91‑1 TTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACA < 1:2523705/91‑1 CGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAA > 2:3446591/1‑91 GTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAAGACAAA > 2:1284988/1‑91 TAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGC < 1:2277508/91‑1 TAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATC < 1:288543/91‑1 TAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATC < 1:2451612/91‑1 TAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATC < 1:2451496/91‑1 CATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAAC < 1:1663767/91‑1 CATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAAC < 1:1663810/91‑1 CATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAAC < 1:1663939/91‑1 ATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACA < 2:3828683/91‑1 TGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGC < 2:3743907/91‑1 TGATTTATGTACCAGCCTGATAAACATATAAATATAAATTTTTATGTTTCACGAAAAAAAAAAAAAAAAGACAAAGCTAAGATCATAACAG < 2:1975279/91‑1 ATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTT < 1:2114059/91‑1 TTTAAGTACCAGCCGGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTT < 2:343913/91‑1 TTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTG < 1:415714/91‑1 TTATGTACCAGCCGGATCAACAAATAAATATAAATTTTTATGTTTCACGAAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTG < 2:283162/91‑1 ATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC < 2:2307772/91‑1 ATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC < 1:3925619/91‑1 ATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC < 2:2314714/91‑1 TGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑T < 1:3938395/91‑1 TGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑T < 1:782173/91‑1 GTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑T < 1:864082/91‑1 GTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑T < 1:864147/91‑1 GTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TT < 1:2590007/91‑1 CAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTT < 2:1393564/91‑1 AGCCTGATAAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTT < 2:1589794/91‑1 AAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGT > 2:1909233/1‑91 AAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGT > 1:1181818/1‑91 AAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGT > 1:593996/1‑91 AAAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGT > 1:3359528/1‑91 AAAGACACAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTGTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTA < 2:3578617/91‑1 AAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTTTTTTTCTTTTAACATAAAAATTTATATTTATATTTTTATCAGGCTGGTt > 2:1137119/1‑90 AAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTA > 1:2797099/1‑91 AAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTA > 2:3202953/1‑91 AAAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTA > 2:2012111/1‑91 AAGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTAC < 2:1797442/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTTTTTTACTTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA > 2:2943428/1‑91 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA < 2:1097563/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA < 1:232012/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA < 2:2702554/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA < 1:34473/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA < 2:2060422/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA < 1:581718/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA < 1:582113/91‑1 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA > 1:70921/1‑91 AGACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA > 1:70843/1‑91 ACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACTTGAAACATAAAAATTTATCTTTATATGTCGATCCGGCTGCTCCATA > 2:834309/1‑91 ACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATA > 2:2458397/1‑91 ACAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATA > 2:833553/1‑91 CAAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTTTTTTTCTTGAAACATAACAAGTTATCTTTATATGTTGATCAGGCTGGTACTTAA > 2:415359/1‑91 AAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAA < 1:3953673/91‑1 AAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAA < 1:3953698/91‑1 AAAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAA < 2:1986761/91‑1 AAGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAAT < 1:2682490/91‑1 AGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACTTG‑ATCATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATta > 2:2534700/1‑89 AGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATC < 1:105682/91‑1 AGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATC > 1:2236611/1‑91 AGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATC < 1:2694880/91‑1 AGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATC > 1:2887796/1‑91 AGCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATC < 2:324435/91‑1 GCTAAGATCATAACAGCTTTGTCTTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATC > 1:1383015/1‑91 GCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCA > 1:1854544/1‑91 GCTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCA < 2:2186167/91‑1 CTAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCAA < 1:3303885/91‑1 TAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCAAT < 1:2958412/91‑1 ATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2866893‑2866995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacaaagctAAGATCATAACAGCTTTGTC‑TTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCAAT < USA300TCH1516_ALE/2867006‑2866917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |