| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2866995 | 150 (0.740) | 23 (0.140) | 13/134 | NT | 14.6% | intergenic (‑394/+59) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein |
| ? | USA300TCH1516_ALE | = 2867006 | 144 (0.850) | intergenic (‑405/+48) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
Only 100 of 286 total aligned reads displayed.
GAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCAT > USA300TCH1516_ALE/2866906‑2867085 | gagCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTg > 2:1885253/1‑91 (MQ=255)gagCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTg > 1:1386041/1‑91 (MQ=255) aTAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTAt < 1:1009427/91‑1 (MQ=255) aTAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTAt < 1:2439388/91‑1 (MQ=255) aTAGAACATTGATTTATGTACCAGCATAATAAACATATAAATATAAATTTTTATGTTTCAAAAAAAAA‑AAAAAAAAA‑GACAAAGCTGTTAt < 2:266490/91‑1 (MQ=255) tAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTaagatc < 1:2451612‑M1/91‑7 (MQ=255) aGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGa > 1:2918665/1‑91 (MQ=255) aaCATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATc < 1:1683946/91‑1 (MQ=255) aCATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCt < 1:1274852/91‑1 (MQ=255) cATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTaagatcataac < 1:1663810‑M1/91‑12 (MQ=255) aTTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTa < 1:2958412‑M2/91‑2 (MQ=255) gATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAAGACAAAGCTGTTATGATCTTagc > 1:1383015‑M2/1‑88 (MQ=255) gATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagct < 1:105682‑M2/91‑5 (MQ=255) ttAAGTACCAGCCTGATCAACATATAAAGATAACTTGTTATGTTTCAAGAAAAAA‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttg > 2:415359‑M2/1‑84 (MQ=255) tATGGAGCAGCCGGATCGACATATAAAGATAAATTTTTATGTTTCAAGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgt > 2:834309‑M2/1‑83 (MQ=255) tGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTaagatcataacagctttgtct < 1:3938395‑M1/91‑22 (MQ=255) tGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgtct > 1:70843‑M2/1‑81 (MQ=255) tGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgtct < 1:582113‑M2/91‑11 (MQ=255) gTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAA‑GACAAAGCTaagatcataacagctttgtct < 1:864147‑M1/91‑22 (MQ=255) tACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAACAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctgtgtcttt < 2:3578617‑M2/91‑13 (MQ=255) tACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgtcttt > 1:2797099‑M2/1‑79 (MQ=255) aacCAGCCTGATAAAAATATAAATATAAATTTTTATGTTAAAAGAAAAAA‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgtcttt > 2:1137119‑M2/2‑79 (MQ=255) aCCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgtctttt > 1:3359528‑M2/1‑78 (MQ=255) aCCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgtctttt > 2:1909233‑M2/1‑78 (MQ=255) aCCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTagctttgtctttt > 1:1181818‑M2/1‑78 (MQ=255) aGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtg > 2:68879/1‑91 (MQ=255) cccgATCAACATATACATATAAATTTTTATGTTTCCCGTAAAAC‑AAAAAACAA‑GACCAAGCTGTTATGACCTTAGCTTTGTCTTTTCtgtg > 2:748628/4‑91 (MQ=255) cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GCCAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt > 1:3409307/1‑91 (MQ=255) cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt < 1:2678900/91‑1 (MQ=255) cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt < 1:159046/91‑1 (MQ=255) cTGATCAACATATAAATATAAATTTTTATGTTTCACATAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt > 1:720905/1‑91 (MQ=255) atGATAAAAATATAAATATAAATTTTTATGTTTAAAGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt < 2:2188112/90‑1 (MQ=255) tGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGtt < 1:2041664/91‑1 (MQ=255) gATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTa < 1:3462556/91‑1 (MQ=255) aTCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAg < 1:3853080/91‑1 (MQ=255) cAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtc > 1:2736548/1‑91 (MQ=255) aaCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtca < 2:197048/91‑1 (MQ=255) aCATATAAATATAAATTTTTATGTTTTACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcat > 2:211448/1‑91 (MQ=255) atataaatataaATTTTTATTTTTCACGTAAAAG‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatca < 1:3245188/91‑1 (MQ=255) atataaataaaaATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatca < 2:3331890/91‑1 (MQ=255) taaatataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGt > 1:1198010/1‑91 (MQ=255) aaatataaatTTTTATGTTAAACGTAAAAA‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGta < 2:254881/91‑1 (MQ=255) aatataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGtat < 2:487789/91‑1 (MQ=255) atataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGtata > 2:241923/1‑91 (MQ=255) atataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGtata > 2:1988042/1‑91 (MQ=255) tataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATAc > 1:684609/1‑91 (MQ=255) tataaatTTTTATGTGTCACGTAAATC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATAc < 2:3423580/91‑1 (MQ=255) ataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACg > 1:490888/1‑91 (MQ=255) ataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACg < 2:706780/91‑1 (MQ=255) aaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGAc < 1:1808402/91‑1 (MQ=255) aatTTTTATGTTTCACGTAAAAC‑‑AAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACAt < 1:1507556/91‑1 (MQ=255) ttttATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc > 1:1134973/1‑91 (MQ=255) ttttATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc < 1:330096/91‑1 (MQ=255) tATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctac > 1:2845792/1‑91 (MQ=255) tATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctac < 1:2399692/91‑1 (MQ=255) aTGTTTCACGTAAAACAAAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctac > 1:2660421/1‑91 (MQ=255) aTGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACCTCctact > 2:3811429/1‑91 (MQ=255) gTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactac < 1:507502/91‑1 (MQ=255) tCACGTAAAAC‑AAAAAAAAA‑GACAAAGCGGTTATAATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTaa < 2:288388/91‑1 (MQ=255) cACGTAAAGC‑AAAAAAAAA‑GACAAAGCTGTTATGAGCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTGCTACGAAc < 2:1262110/91‑1 (MQ=255) aCGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACg < 1:3697868/91‑1 (MQ=255) aCGAAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACg < 2:1281338/91‑1 (MQ=255) cGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGt < 2:400564/91‑1 (MQ=255) tAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGttt > 1:2208348/1‑91 (MQ=255) aaaaC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTta > 1:3943263/1‑91 (MQ=255) aC‑AAAAAAAAA‑GACAAAGCTGTTATGACCTTAGCTTTGACTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtatat > 2:2936966/1‑91 (MQ=255) aaacaaaaa‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTatatat < 1:3113969/91‑1 (MQ=255) aaaaaaaa‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATAtt < 2:3014227/91‑1 (MQ=255) aaaaaaa‑GACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgtttatcaggct < 2:1589794‑M2/91‑65 (MQ=255) aaaaaa‑GACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctg < 2:1393564‑M2/91‑66 (MQ=255) aaaaaa‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCg > 2:1806188/1‑91 (MQ=255) aaaaa‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGa < 2:3829365/91‑1 (MQ=255) aaa‑GACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggta > 2:2012111‑M1/1‑12 (MQ=255) aaa‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAt > 2:251934/1‑91 (MQ=255) aaa‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTCTCTATATTCGAAt > 2:1565524/1‑91 (MQ=255) aa‑GACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtac < 1:2590007‑M2/91‑70 (MQ=255) a‑GACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca < 1:581718‑M1/91‑82 (MQ=255) a‑GACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca < 1:232012‑M1/91‑82 (MQ=255) a‑GACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca < 2:2702554‑M1/91‑82 (MQ=255) a‑GACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca < 2:1097563‑M1/91‑82 (MQ=255) a‑GACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca < 2:2060422‑M1/91‑82 (MQ=255) a‑GACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca < 1:782173‑M2/91‑71 (MQ=255) a‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttt < 1:2247382/91‑1 (MQ=255) a‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttt > 1:1352168/1‑91 (MQ=255) gACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacat < 2:2307772‑M2/91‑72 (MQ=255) aCAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacata > 2:833553‑M1/1‑8 (MQ=255) cAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataa < 1:415714‑M2/91‑74 (MQ=255) cAAAGCGGGAATGAGCATAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTa > 2:2812247/1‑91 (MQ=255) aaaGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaa < 2:1986761‑M1/91‑86 (MQ=255) aaaGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaa < 1:3953698‑M1/91‑86 (MQ=255) aaGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaat < 1:2114059‑M2/91‑76 (MQ=255) aGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatc < 1:2694880‑M1/91‑88 (MQ=255) aGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatc < 2:324435‑M1/91‑88 (MQ=255) aGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatc > 1:2887796‑M1/1‑4 (MQ=255) gCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca > 1:1854544‑M1/1‑3 (MQ=255) gCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca < 2:2186167‑M1/91‑89 (MQ=255) gCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca < 2:3743907‑M2/91‑78 (MQ=255) cTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaa < 1:3303885‑M1/91‑90 (MQ=255) tGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCat < 1:599539/91‑1 (MQ=255) tGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATATATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCat < 2:3474928/91‑1 (MQ=255) | GAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAA‑GACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCAT > USA300TCH1516_ALE/2866906‑2867085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |